Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CHMP1AQ9HD42 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 AC130686.1-201ENST00000622936 2466 ntBASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 TREML5P-201ENST00000421694 576 ntBASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 MEIS3P1-201ENST00000495167 958 ntBASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 AL158212.4-201ENST00000624062 1286 ntBASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 AL137783.1-201ENST00000623494 1896 ntBASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 GOLGA8VP-201ENST00000559009 1798 ntBASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 USO1-201ENST00000264904 4135 ntTSL 2 BASIC12.73□□□□□ -0.37
CHMP1AQ9HD42 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 AC100757.3-201ENST00000622361 1406 ntBASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 AC011700.1-201ENST00000610409 2627 ntBASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 TPT1P11-201ENST00000458482 498 ntBASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms