Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 EGLN3-205ENST00000547327 2849 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 USP39-220ENST00000613444 2161 ntTSL 2 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 OR7E115P-201ENST00000382617 1024 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 HNRNPA1P5-201ENST00000558213 966 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 ANKRD26P1-203ENST00000569528 966 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 TCAF2P1-201ENST00000291129 2421 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 CCT8L1P-201ENST00000465400 1674 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 FAM197Y6-201ENST00000420524 766 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 SEPHS2P1-201ENST00000511618 1162 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 LY6E-215ENST00000523847 427 ntTSL 3 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 ESR1-214ENST00000638569 132 ntTSL 5 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 AL365181.1-201ENST00000564032 1828 ntBASIC11.81□□□□□ -0.52
VPS13CQ709C8 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC11.81□□□□□ -0.52
VPS13CQ709C8 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
VPS13CQ709C8 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 AL022313.4-201ENST00000562756 2046 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 SIRPB3P-201ENST00000340424 1216 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 RN7SL788P-201ENST00000460504 316 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 AC006986.1-201ENST00000612764 241 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 KRT18P4-201ENST00000422599 1288 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 CDK4P1-201ENST00000454213 828 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 PRSS3P1-201ENST00000503996 742 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 BATF-202ENST00000555504 361 ntTSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 RPL5P21-201ENST00000404620 815 ntBASIC11.8□□□□□ -0.52
VPS13CQ709C8 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms