Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PTPN4P29074 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.82□□□□□ -0.04
PTPN4P29074 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 AC004945.1-201ENST00000416738 983 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 ACTG1P3-201ENST00000431775 1114 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 CROCCP4-201ENST00000457096 498 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.82□□□□□ -0.04
PTPN4P29074 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
PTPN4P29074 AC104989.1-201ENST00000519711 778 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.82□□□□□ -0.04
PTPN4P29074 ENPP7P5-201ENST00000541031 1031 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
PTPN4P29074 AL359711.2-201ENST00000563105 872 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 MIR4259-201ENST00000584466 101 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 RPSAP52-203ENST00000622976 1023 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PTPN4P29074 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PTPN4P29074 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 AC018665.1-201ENST00000622927 1362 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 AC083964.2-201ENST00000623988 2396 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
PTPN4P29074 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PTPN4P29074 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PTPN4P29074 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.81□□□□□ -0.04
PTPN4P29074 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.81□□□□□ -0.04
PTPN4P29074 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.81□□□□□ -0.04
PTPN4P29074 AC134915.1-201ENST00000426461 574 ntBASIC14.81□□□□□ -0.04
PTPN4P29074 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 AC119751.2-201ENST00000504529 210 ntBASIC14.81□□□□□ -0.04
PTPN4P29074 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN4P29074 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.81□□□□□ -0.04
PTPN4P29074 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN4P29074 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
PTPN4P29074 MIR5189-201ENST00000577370 114 ntBASIC14.81□□□□□ -0.04
PTPN4P29074 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.81□□□□□ -0.04
PTPN4P29074 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN4P29074 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN4P29074 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN4P29074 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN4P29074 AC023794.5-201ENST00000564380 2157 ntBASIC14.81□□□□□ -0.04
PTPN4P29074 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PTPN4P29074 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN4P29074 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms