Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.22■□□□□ 0.19
COL11A1P12107 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 GOLGA8UP-201ENST00000527159 1755 ntBASIC16.22■□□□□ 0.19
COL11A1P12107 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.22■□□□□ 0.19
COL11A1P12107 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.22■□□□□ 0.19
COL11A1P12107 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
COL11A1P12107 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
COL11A1P12107 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC16.22■□□□□ 0.19
COL11A1P12107 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC16.22■□□□□ 0.19
COL11A1P12107 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
COL11A1P12107 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL11A1P12107 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC16.22■□□□□ 0.19
COL11A1P12107 RN7SL556P-201ENST00000582856 298 ntBASIC16.22■□□□□ 0.19
COL11A1P12107 AC011247.3-201ENST00000603297 438 ntBASIC16.22■□□□□ 0.19
COL11A1P12107 AC073592.2-201ENST00000623062 780 ntBASIC16.22■□□□□ 0.19
COL11A1P12107 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC16.22■□□□□ 0.19
COL11A1P12107 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
COL11A1P12107 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.21■□□□□ 0.19
COL11A1P12107 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.21■□□□□ 0.19
COL11A1P12107 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
COL11A1P12107 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.21■□□□□ 0.19
COL11A1P12107 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.21■□□□□ 0.19
COL11A1P12107 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
COL11A1P12107 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
COL11A1P12107 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.21■□□□□ 0.19
COL11A1P12107 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC16.21■□□□□ 0.19
COL11A1P12107 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
COL11A1P12107 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
COL11A1P12107 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
COL11A1P12107 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.21■□□□□ 0.19
COL11A1P12107 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL11A1P12107 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL11A1P12107 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL11A1P12107 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.21■□□□□ 0.18
COL11A1P12107 AC015909.5-201ENST00000624336 2266 ntBASIC16.21■□□□□ 0.18
COL11A1P12107 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
COL11A1P12107 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.18
COL11A1P12107 HSPA8P5-201ENST00000456928 2069 ntBASIC16.21■□□□□ 0.18
COL11A1P12107 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL11A1P12107 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL11A1P12107 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL11A1P12107 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.2■□□□□ 0.18
COL11A1P12107 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC16.2■□□□□ 0.18
COL11A1P12107 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
COL11A1P12107 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.2■□□□□ 0.18
COL11A1P12107 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
COL11A1P12107 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
COL11A1P12107 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.2■□□□□ 0.18
COL11A1P12107 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
COL11A1P12107 SAT1-201ENST00000379251 801 ntTSL 2 BASIC16.2■□□□□ 0.18
COL11A1P12107 SAT1-202ENST00000379253 909 ntTSL 2 BASIC16.2■□□□□ 0.18
COL11A1P12107 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16.2■□□□□ 0.18
COL11A1P12107 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC16.2■□□□□ 0.18
COL11A1P12107 NSD1-211ENST00000511258 809 ntTSL 3 BASIC16.2■□□□□ 0.18
COL11A1P12107 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC16.2■□□□□ 0.18
COL11A1P12107 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC16.2■□□□□ 0.18
COL11A1P12107 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
COL11A1P12107 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
COL11A1P12107 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL11A1P12107 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC16.2■□□□□ 0.18
COL11A1P12107 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC16.2■□□□□ 0.18
COL11A1P12107 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.19■□□□□ 0.18
COL11A1P12107 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 AC093909.3-201ENST00000504783 336 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC16.19■□□□□ 0.18
COL11A1P12107 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms