Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 AC092506.1-202ENST00000401022 528 ntBASIC18.91■□□□□ 0.62
COL3A1P02461 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC18.91■□□□□ 0.62
COL3A1P02461 EEF1DP2-201ENST00000433698 843 ntBASIC18.91■□□□□ 0.62
COL3A1P02461 AL627422.1-201ENST00000434104 580 ntBASIC18.91■□□□□ 0.62
COL3A1P02461 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC18.91■□□□□ 0.62
COL3A1P02461 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC18.91■□□□□ 0.62
COL3A1P02461 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL3A1P02461 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.91■□□□□ 0.62
COL3A1P02461 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 NPM1P43-201ENST00000558669 786 ntBASIC18.91■□□□□ 0.62
COL3A1P02461 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.91■□□□□ 0.62
COL3A1P02461 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
COL3A1P02461 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC18.91■□□□□ 0.62
COL3A1P02461 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.91■□□□□ 0.62
COL3A1P02461 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL3A1P02461 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL3A1P02461 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC18.91■□□□□ 0.62
COL3A1P02461 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC18.9■□□□□ 0.62
COL3A1P02461 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC18.9■□□□□ 0.62
COL3A1P02461 RPS2P36-201ENST00000456516 831 ntBASIC18.9■□□□□ 0.62
COL3A1P02461 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 CHCHD2P2-201ENST00000503744 321 ntBASIC18.9■□□□□ 0.62
COL3A1P02461 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC18.9■□□□□ 0.62
COL3A1P02461 MT3-203ENST00000565838 421 ntTSL 3 BASIC18.9■□□□□ 0.62
COL3A1P02461 MIR2392-201ENST00000584881 84 ntBASIC18.9■□□□□ 0.62
COL3A1P02461 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.9■□□□□ 0.62
COL3A1P02461 SIGLEC22P-201ENST00000599104 714 ntBASIC18.9■□□□□ 0.62
COL3A1P02461 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC18.9■□□□□ 0.62
COL3A1P02461 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL3A1P02461 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC18.9■□□□□ 0.62
COL3A1P02461 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
COL3A1P02461 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC18.9■□□□□ 0.62
COL3A1P02461 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.9■□□□□ 0.62
COL3A1P02461 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC18.9■□□□□ 0.62
COL3A1P02461 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
COL3A1P02461 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC18.9■□□□□ 0.62
COL3A1P02461 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
COL3A1P02461 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 PYY2-201ENST00000315776 282 ntBASIC18.9■□□□□ 0.62
COL3A1P02461 LINC00265-2P-201ENST00000413372 782 ntBASIC18.9■□□□□ 0.62
COL3A1P02461 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL3A1P02461 CHCHD2P9-201ENST00000461726 456 ntBASIC18.9■□□□□ 0.62
COL3A1P02461 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC18.9■□□□□ 0.62
COL3A1P02461 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 MIR6842-201ENST00000612539 65 ntBASIC18.9■□□□□ 0.62
COL3A1P02461 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL3A1P02461 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL3A1P02461 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL3A1P02461 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL3A1P02461 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL3A1P02461 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL3A1P02461 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL3A1P02461 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
COL3A1P02461 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL3A1P02461 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL3A1P02461 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL3A1P02461 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 TUBB4AP1-201ENST00000450755 1325 ntBASIC18.89■□□□□ 0.61
COL3A1P02461 RPL13AP3-202ENST00000494676 1473 ntBASIC18.89■□□□□ 0.61
COL3A1P02461 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC18.89■□□□□ 0.61
COL3A1P02461 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC18.89■□□□□ 0.61
COL3A1P02461 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL3A1P02461 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL3A1P02461 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms