Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
SDCBPO00560 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 MIR770-201ENST00000390219 98 ntBASIC12.58□□□□□ -0.4
SDCBPO00560 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.58□□□□□ -0.4
SDCBPO00560 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 KRT8P14-201ENST00000414254 1442 ntBASIC12.58□□□□□ -0.4
SDCBPO00560 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC12.58□□□□□ -0.4
SDCBPO00560 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC12.58□□□□□ -0.4
SDCBPO00560 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.58□□□□□ -0.4
SDCBPO00560 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.58□□□□□ -0.4
SDCBPO00560 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC12.58□□□□□ -0.4
SDCBPO00560 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC12.58□□□□□ -0.4
SDCBPO00560 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 AC093813.1-201ENST00000605066 256 ntBASIC12.58□□□□□ -0.4
SDCBPO00560 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 PPT1-213ENST00000641319 2388 ntBASIC12.58□□□□□ -0.4
SDCBPO00560 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 AL158070.2-201ENST00000623713 1621 ntBASIC12.58□□□□□ -0.4
SDCBPO00560 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 DGCR9-201ENST00000609630 2415 ntBASIC12.58□□□□□ -0.4
SDCBPO00560 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC12.58□□□□□ -0.4
SDCBPO00560 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC12.58□□□□□ -0.4
SDCBPO00560 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SDCBPO00560 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.57□□□□□ -0.4
SDCBPO00560 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.57□□□□□ -0.4
SDCBPO00560 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC12.57□□□□□ -0.4
SDCBPO00560 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
SDCBPO00560 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SDCBPO00560 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC12.57□□□□□ -0.4
SDCBPO00560 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC12.57□□□□□ -0.4
SDCBPO00560 AC134915.1-201ENST00000426461 574 ntBASIC12.57□□□□□ -0.4
SDCBPO00560 AL353779.1-201ENST00000434793 351 ntBASIC12.57□□□□□ -0.4
SDCBPO00560 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.57□□□□□ -0.4
SDCBPO00560 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC12.57□□□□□ -0.4
SDCBPO00560 AC027796.2-201ENST00000575326 344 ntBASIC12.57□□□□□ -0.4
SDCBPO00560 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12.57□□□□□ -0.4
SDCBPO00560 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 AC004233.3-201ENST00000607794 1269 ntBASIC12.57□□□□□ -0.4
SDCBPO00560 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 C8orf49-201ENST00000525043 1968 ntBASIC12.57□□□□□ -0.4
SDCBPO00560 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
SDCBPO00560 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SDCBPO00560 INTS4P2-202ENST00000614726 2019 ntBASIC12.57□□□□□ -0.4
SDCBPO00560 AC093525.8-201ENST00000624099 1342 ntBASIC12.57□□□□□ -0.4
SDCBPO00560 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms