Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CBFB-203ENST00000561924 584 ntTSL 5 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 AC027612.4-201ENST00000605371 583 ntBASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.79□□□□□ -0.36
CHMP1AQ9HD42 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 MRVI1-201ENST00000423302 6126 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC107890.1-201ENST00000422478 521 ntBASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 IGHV3-42-201ENST00000520410 361 ntBASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC000095.1-201ENST00000603208 874 ntBASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ESPL1-205ENST00000552462 6447 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 SLX4-201ENST00000294008 7307 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 MAPK10-262ENST00000641051 5738 ntBASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AL360270.3-201ENST00000609118 1348 ntBASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 FBN1-201ENST00000316623 11756 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CHMP1AQ9HD42 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC12.77□□□□□ -0.36
CHMP1AQ9HD42 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHMP1AQ9HD42 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms