Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 SSR4-202ENST00000370085 526 ntTSL 2 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 NQO2-204ENST00000380454 851 ntTSL 2 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 USP17L6P-201ENST00000382470 1197 ntBASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 AP000244.1-201ENST00000424582 201 ntBASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 AC104961.1-201ENST00000427605 771 ntBASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 AC092115.1-201ENST00000566277 1402 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 GGTLC4P-201ENST00000402176 664 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 AL157823.1-201ENST00000403727 628 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 PGAM1P11-201ENST00000416729 680 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 NALT1-202ENST00000450304 437 ntTSL 3 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 VDAC1P11-201ENST00000458323 852 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 NAV1-210ENST00000593583 726 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 PRMT1P1-201ENST00000604252 1009 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 MIR6125-201ENST00000618986 96 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 PES1P2-201ENST00000449745 1735 ntBASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHANK3Q9BYB0 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 SOD2-205ENST00000444946 917 ntTSL 2 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 AL590235.1-201ENST00000564650 861 ntBASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SHANK3Q9BYB0 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms