RNA–Protein interactions for RNA: ENST00000340660.10

ATXN3-201, Transcript of ataxin 3, humanhuman

TSL 1 (best) BASIC

Gene ATXN3, Length 1,205 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-201ENST00000340660 AEBP2Q6ZN18 517 aaPredicted RBP38.72■■■■□ 3.79
ATXN3-201ENST00000340660 CHIC1Q5VXU3 224 aa37.03■■■■□ 3.52
ATXN3-201ENST00000340660 SENP3Q9H4L4 574 aaPredicted RBP32.9■■■□□ 2.86
ATXN3-201ENST00000340660 PHF23Q9BUL5 403 aaPredicted RBP32.54■■■□□ 2.8
ATXN3-201ENST00000340660 FOXD1Q16676 465 aa30.66■■■□□ 2.5
ATXN3-201ENST00000340660 NISCHQ9Y2I1 1504 aa30.06■■■□□ 2.4
ATXN3-201ENST00000340660 PLPPR3Q6T4P5 718 aa29.7■■■□□ 2.35
ATXN3-201ENST00000340660 ABCC9O60706 1549 aa29.4■■■□□ 2.3
ATXN3-201ENST00000340660 DNAJC5BQ9UF47 199 aa29.21■■■□□ 2.27
ATXN3-201ENST00000340660 PPP6R1Q9UPN7 881 aa28.95■■■□□ 2.22
ATXN3-201ENST00000340660 ADRA2BP18089 450 aa28.84■■■□□ 2.21
ATXN3-201ENST00000340660 PIAS4Q8N2W9 510 aaPredicted RBP28.7■■■□□ 2.18
ATXN3-201ENST00000340660 MSH5O43196 834 aa28.53■■■□□ 2.16
ATXN3-201ENST00000340660 DNAJC5Q9H3Z4 198 aa27.97■■■□□ 2.07
ATXN3-201ENST00000340660 CCDC180Q9P1Z9 1646 aa27.64■■■□□ 2.02
ATXN3-201ENST00000340660 POTEDQ86YR6 584 aa27.36■■□□□ 1.97
ATXN3-201ENST00000340660 RB1CC1Q8TDY2 1594 aa27.15■■□□□ 1.94
ATXN3-201ENST00000340660 PABPN1Q86U42 306 aaKnown RBP eCLIP27.12■■□□□ 1.93
ATXN3-201ENST00000340660 CECR2Q9BXF3 1484 aa26.65■■□□□ 1.86
ATXN3-201ENST00000340660 NACADO15069 1562 aa26.56■■□□□ 1.84
ATXN3-201ENST00000340660 UNC13AQ9UPW8 1703 aa26.56■■□□□ 1.84
ATXN3-201ENST00000340660 BICRAQ9NZM4 1560 aa26.54■■□□□ 1.84
ATXN3-201ENST00000340660 CC2D2AQ9P2K1 1620 aa26.46■■□□□ 1.83
ATXN3-201ENST00000340660 MAPK8IP2Q13387 824 aaPredicted RBP26.41■■□□□ 1.82
ATXN3-201ENST00000340660 SCAF1Q9H7N4 1312 aaKnown RBP26.3■■□□□ 1.8
ATXN3-201ENST00000340660 DMRT2Q9Y5R5 561 aa26.17■■□□□ 1.78
ATXN3-201ENST00000340660 PPP4R3CPQ6ZMV5 832 aa26.09■■□□□ 1.77
ATXN3-201ENST00000340660 DCAF8L2P0C7V8 631 aa26.05■■□□□ 1.76
ATXN3-201ENST00000340660 TRIM41Q8WV44 630 aa26.02■■□□□ 1.76
ATXN3-201ENST00000340660 CUX2O14529 1486 aa26■■□□□ 1.75
ATXN3-201ENST00000340660 EIF4G1Q04637 1599 aaKnown RBP25.98■■□□□ 1.75
ATXN3-201ENST00000340660 SHROOM4Q9ULL8 1493 aa25.89■■□□□ 1.73
ATXN3-201ENST00000340660 MYO15BQ96JP2 1530 aa25.63■■□□□ 1.69
ATXN3-201ENST00000340660 CNKSR2Q8WXI2 1034 aa25.51■■□□□ 1.67
ATXN3-201ENST00000340660 ERCC6Q03468 1493 aa25.45■■□□□ 1.66
ATXN3-201ENST00000340660 HOXD11P31277 338 aaPredicted RBP25.34■■□□□ 1.65
ATXN3-201ENST00000340660 RNF216Q9NWF9 866 aaPredicted RBP25.22■■□□□ 1.63
ATXN3-201ENST00000340660 SCRIBQ14160 1630 aa25.17■■□□□ 1.62
ATXN3-201ENST00000340660 NCBP3Q53F19 620 aaKnown RBP25.12■■□□□ 1.61
ATXN3-201ENST00000340660 DCAF8L1A6NGE4 600 aa25.01■■□□□ 1.59
ATXN3-201ENST00000340660 THOC2Q8NI27 1593 aaKnown RBP24.87■■□□□ 1.57
ATXN3-201ENST00000340660 NPM3O75607 178 aaKnown RBP24.84■■□□□ 1.57
ATXN3-201ENST00000340660 NESP48681 1621 aa24.81■■□□□ 1.56
ATXN3-201ENST00000340660 DCAF1Q9Y4B6 1507 aa24.69■■□□□ 1.54
ATXN3-201ENST00000340660 KCNA4P22459 653 aa24.65■■□□□ 1.54
ATXN3-201ENST00000340660 NCAPD3P42695 1498 aa24.59■■□□□ 1.53
ATXN3-201ENST00000340660 ZCCHC6Q5VYS8 1495 aaKnown RBP24.56■■□□□ 1.52
ATXN3-201ENST00000340660 SMARCA2P51531 1590 aa24.54■■□□□ 1.52
ATXN3-201ENST00000340660 BAZ1AQ9NRL2 1556 aaPredicted RBP24.51■■□□□ 1.51
ATXN3-201ENST00000340660 OSCARQ8IYS5 282 aa24.5■■□□□ 1.51
ATXN3-201ENST00000340660 RIMBP3CA6NJZ7 1639 aa24.43■■□□□ 1.5
ATXN3-201ENST00000340660 RIMBP3BA6NNM3 1639 aa24.43■■□□□ 1.5
ATXN3-201ENST00000340660 RIMBP3Q9UFD9 1639 aa24.43■■□□□ 1.5
ATXN3-201ENST00000340660 RNF39Q9H2S5 420 aa24.41■■□□□ 1.5
ATXN3-201ENST00000340660 KIF21AQ7Z4S6 1674 aa24.35■■□□□ 1.49
ATXN3-201ENST00000340660 TRHP20396 242 aaPredicted RBP24.32■■□□□ 1.48
ATXN3-201ENST00000340660 ATAD2BQ9ULI0 1458 aa24.29■■□□□ 1.48
ATXN3-201ENST00000340660 CACNB1Q02641 598 aaPredicted RBP24.27■■□□□ 1.48
ATXN3-201ENST00000340660 LAMC3Q9Y6N6 1575 aa24.25■■□□□ 1.47
ATXN3-201ENST00000340660 ILDR1Q86SU0 546 aaPredicted RBP24.24■■□□□ 1.47
ATXN3-201ENST00000340660 HMGXB3Q12766 1538 aa24.23■■□□□ 1.47
ATXN3-201ENST00000340660 ARHGEF11O15085 1522 aa24.18■■□□□ 1.46
ATXN3-201ENST00000340660 PDS5BQ9NTI5 1447 aa24.17■■□□□ 1.46
ATXN3-201ENST00000340660 WDR62O43379 1518 aa24.13■■□□□ 1.45
ATXN3-201ENST00000340660 MRC2Q9UBG0 1479 aa24.11■■□□□ 1.45
ATXN3-201ENST00000340660 CYB5RLQ6IPT4 315 aa24.08■■□□□ 1.45
ATXN3-201ENST00000340660 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.08■■□□□ 1.45
ATXN3-201ENST00000340660 C1QBPQ07021 282 aaKnown RBP24.04■■□□□ 1.44
ATXN3-201ENST00000340660 BAZ1BQ9UIG0 1483 aaKnown RBP23.92■■□□□ 1.42
ATXN3-201ENST00000340660 ARAP1Q96P48 1450 aa23.86■■□□□ 1.41
ATXN3-201ENST00000340660 SMARCA4P51532 1647 aa23.81■■□□□ 1.4
ATXN3-201ENST00000340660 CADPSQ9ULU8 1353 aa23.75■■□□□ 1.39
ATXN3-201ENST00000340660 U3KPZ7 1027 aaPredicted RBP23.67■■□□□ 1.38
ATXN3-201ENST00000340660 SLC4A2P04920 1241 aa23.66■■□□□ 1.38
ATXN3-201ENST00000340660 CEP164Q9UPV0 1460 aa23.65■■□□□ 1.38
ATXN3-201ENST00000340660 PEG3Q9GZU2 1588 aa23.59■■□□□ 1.37
ATXN3-201ENST00000340660 FANCD2Q9BXW9 1451 aa23.49■■□□□ 1.35
ATXN3-201ENST00000340660 RSF1Q96T23 1441 aaPredicted RBP23.46■■□□□ 1.35
ATXN3-201ENST00000340660 ZNF608Q9ULD9 1512 aaPredicted RBP23.46■■□□□ 1.35
ATXN3-201ENST00000340660 URB2Q14146 1524 aaKnown RBP23.45■■□□□ 1.34
ATXN3-201ENST00000340660 CHD1O14646 1710 aa23.3■■□□□ 1.32
ATXN3-201ENST00000340660 SLC4A1APQ9BWU0 796 aaKnown RBP23.29■■□□□ 1.32
ATXN3-201ENST00000340660 IFT140Q96RY7 1462 aa23.24■■□□□ 1.31
ATXN3-201ENST00000340660 SPINK5Q9NQ38 1064 aaPredicted RBP23.24■■□□□ 1.31
ATXN3-201ENST00000340660 KDM4FA0A1W2PPD8 638 aa23.23■■□□□ 1.31
ATXN3-201ENST00000340660 EIF4G3O43432 1585 aaKnown RBP23.18■■□□□ 1.3
ATXN3-201ENST00000340660 MROH2BQ7Z745 1585 aa23.18■■□□□ 1.3
ATXN3-201ENST00000340660 CFTRP13569 1480 aa23.13■■□□□ 1.29
ATXN3-201ENST00000340660 CAPN15O75808 1086 aa23.12■■□□□ 1.29
ATXN3-201ENST00000340660 FBLN2P98095 1184 aa23.12■■□□□ 1.29
ATXN3-201ENST00000340660 CLASP1Q7Z460 1538 aa23.06■■□□□ 1.28
ATXN3-201ENST00000340660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.03■■□□□ 1.28
ATXN3-201ENST00000340660 HNRNPUL2Q1KMD3 747 aaKnown RBP23.03■■□□□ 1.28
ATXN3-201ENST00000340660 AQRO60306 1485 aaKnown RBP eCLIP23■■□□□ 1.27
ATXN3-201ENST00000340660 DSG3P32926 999 aa22.97■■□□□ 1.27
ATXN3-201ENST00000340660 APLP2Q06481 763 aa22.95■■□□□ 1.26
ATXN3-201ENST00000340660 MYCNP04198 464 aaPredicted RBP22.94■■□□□ 1.26
ATXN3-201ENST00000340660 FBXO41Q8TF61 875 aa22.94■■□□□ 1.26
ATXN3-201ENST00000340660 SAMD1Q6SPF0 538 aaPredicted RBP22.93■■□□□ 1.26
ATXN3-201ENST00000340660 GAPVD1Q14C86 1478 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms