Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
FOXA1P55317 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
FOXA1P55317 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
FOXA1P55317 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
FOXA1P55317 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.24□□□□□ -0.13
FOXA1P55317 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.24□□□□□ -0.13
FOXA1P55317 FTLP10-202ENST00000505798 471 ntBASIC14.24□□□□□ -0.13
FOXA1P55317 AC106760.1-201ENST00000508690 800 ntBASIC14.24□□□□□ -0.13
FOXA1P55317 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.24□□□□□ -0.13
FOXA1P55317 MIR5189-201ENST00000577370 114 ntBASIC14.24□□□□□ -0.13
FOXA1P55317 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.24□□□□□ -0.13
FOXA1P55317 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.24□□□□□ -0.13
FOXA1P55317 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
FOXA1P55317 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
FOXA1P55317 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
FOXA1P55317 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
FOXA1P55317 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
FOXA1P55317 RN7SKP175-201ENST00000408472 289 ntBASIC14.23□□□□□ -0.13
FOXA1P55317 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 PIN1P1-201ENST00000412108 996 ntBASIC14.23□□□□□ -0.13
FOXA1P55317 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.23□□□□□ -0.13
FOXA1P55317 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.23□□□□□ -0.13
FOXA1P55317 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.23□□□□□ -0.13
FOXA1P55317 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.23□□□□□ -0.13
FOXA1P55317 AL096865.1-201ENST00000606796 927 ntBASIC14.23□□□□□ -0.13
FOXA1P55317 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 AP000593.2-201ENST00000542775 1433 ntBASIC14.23□□□□□ -0.13
FOXA1P55317 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
FOXA1P55317 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
FOXA1P55317 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
FOXA1P55317 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms