Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AL033527.3-201ENST00000566366 1196 ntBASIC23.74■■□□□ 1.39
DDX56Q9NY93 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX56Q9NY93 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX56Q9NY93 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX56Q9NY93 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.73■■□□□ 1.39
DDX56Q9NY93 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.73■■□□□ 1.39
DDX56Q9NY93 AC092068.2-201ENST00000590491 1708 ntBASIC23.73■■□□□ 1.39
DDX56Q9NY93 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX56Q9NY93 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
DDX56Q9NY93 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.73■■□□□ 1.39
DDX56Q9NY93 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
DDX56Q9NY93 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
DDX56Q9NY93 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX56Q9NY93 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
DDX56Q9NY93 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX56Q9NY93 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.72■■□□□ 1.39
DDX56Q9NY93 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.72■■□□□ 1.39
DDX56Q9NY93 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.72■■□□□ 1.39
DDX56Q9NY93 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.72■■□□□ 1.39
DDX56Q9NY93 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
DDX56Q9NY93 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
DDX56Q9NY93 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX56Q9NY93 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.71■■□□□ 1.39
DDX56Q9NY93 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
DDX56Q9NY93 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX56Q9NY93 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
DDX56Q9NY93 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.71■■□□□ 1.39
DDX56Q9NY93 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.71■■□□□ 1.39
DDX56Q9NY93 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.7■■□□□ 1.38
DDX56Q9NY93 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.7■■□□□ 1.38
DDX56Q9NY93 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX56Q9NY93 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX56Q9NY93 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX56Q9NY93 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX56Q9NY93 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
DDX56Q9NY93 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.69■■□□□ 1.38
DDX56Q9NY93 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX56Q9NY93 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
DDX56Q9NY93 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX56Q9NY93 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
DDX56Q9NY93 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX56Q9NY93 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX56Q9NY93 AC133561.1-201ENST00000568600 2415 ntBASIC23.69■■□□□ 1.38
DDX56Q9NY93 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.68■■□□□ 1.38
DDX56Q9NY93 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.68■■□□□ 1.38
DDX56Q9NY93 AC004448.1-201ENST00000458332 883 ntBASIC23.68■■□□□ 1.38
DDX56Q9NY93 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.68■■□□□ 1.38
DDX56Q9NY93 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX56Q9NY93 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
DDX56Q9NY93 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX56Q9NY93 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
DDX56Q9NY93 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
DDX56Q9NY93 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
DDX56Q9NY93 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX56Q9NY93 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX56Q9NY93 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX56Q9NY93 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.67■■□□□ 1.38
DDX56Q9NY93 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.67■■□□□ 1.38
DDX56Q9NY93 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX56Q9NY93 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.67■■□□□ 1.38
DDX56Q9NY93 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
DDX56Q9NY93 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
DDX56Q9NY93 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
DDX56Q9NY93 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
DDX56Q9NY93 AC103834.1-201ENST00000520383 144 ntBASIC23.66■■□□□ 1.38
DDX56Q9NY93 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
DDX56Q9NY93 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
DDX56Q9NY93 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
DDX56Q9NY93 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
DDX56Q9NY93 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX56Q9NY93 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
DDX56Q9NY93 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX56Q9NY93 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
DDX56Q9NY93 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.65■■□□□ 1.38
DDX56Q9NY93 YBX1P4-201ENST00000392794 808 ntBASIC23.65■■□□□ 1.38
DDX56Q9NY93 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.65■■□□□ 1.38
DDX56Q9NY93 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX56Q9NY93 DUSP8P3-201ENST00000399571 1760 ntBASIC23.65■■□□□ 1.38
DDX56Q9NY93 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX56Q9NY93 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
DDX56Q9NY93 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.64■■□□□ 1.38
DDX56Q9NY93 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
DDX56Q9NY93 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
DDX56Q9NY93 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.64■■□□□ 1.37
DDX56Q9NY93 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
DDX56Q9NY93 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX56Q9NY93 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
DDX56Q9NY93 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.64■■□□□ 1.37
DDX56Q9NY93 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
DDX56Q9NY93 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.63■■□□□ 1.37
DDX56Q9NY93 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
DDX56Q9NY93 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms