Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.36■■□□□ 1.17
VRK3Q8IV63 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
VRK3Q8IV63 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.36■■□□□ 1.17
VRK3Q8IV63 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
VRK3Q8IV63 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
VRK3Q8IV63 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
VRK3Q8IV63 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
VRK3Q8IV63 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.36■■□□□ 1.17
VRK3Q8IV63 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
VRK3Q8IV63 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
VRK3Q8IV63 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.35■■□□□ 1.17
VRK3Q8IV63 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
VRK3Q8IV63 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VRK3Q8IV63 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
VRK3Q8IV63 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
VRK3Q8IV63 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.34■■□□□ 1.17
VRK3Q8IV63 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
VRK3Q8IV63 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.34■■□□□ 1.17
VRK3Q8IV63 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.34■■□□□ 1.17
VRK3Q8IV63 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.34■■□□□ 1.17
VRK3Q8IV63 MIR6722-201ENST00000617286 78 ntBASIC22.34■■□□□ 1.17
VRK3Q8IV63 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
VRK3Q8IV63 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.34■■□□□ 1.17
VRK3Q8IV63 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.34■■□□□ 1.17
VRK3Q8IV63 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VRK3Q8IV63 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
VRK3Q8IV63 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
VRK3Q8IV63 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
VRK3Q8IV63 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
VRK3Q8IV63 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.33■■□□□ 1.17
VRK3Q8IV63 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
VRK3Q8IV63 MTDHP2-201ENST00000601468 714 ntBASIC22.33■■□□□ 1.17
VRK3Q8IV63 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
VRK3Q8IV63 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.33■■□□□ 1.16
VRK3Q8IV63 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
VRK3Q8IV63 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
VRK3Q8IV63 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 AC010997.5-201ENST00000609182 354 ntBASIC22.32■■□□□ 1.16
VRK3Q8IV63 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.32■■□□□ 1.16
VRK3Q8IV63 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.32■■□□□ 1.16
VRK3Q8IV63 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VRK3Q8IV63 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.31■■□□□ 1.16
VRK3Q8IV63 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC22.31■■□□□ 1.16
VRK3Q8IV63 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.31■■□□□ 1.16
VRK3Q8IV63 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
VRK3Q8IV63 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VRK3Q8IV63 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
VRK3Q8IV63 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.31■■□□□ 1.16
VRK3Q8IV63 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VRK3Q8IV63 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
VRK3Q8IV63 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
VRK3Q8IV63 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
VRK3Q8IV63 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VRK3Q8IV63 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
VRK3Q8IV63 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC22.3■■□□□ 1.16
VRK3Q8IV63 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VRK3Q8IV63 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VRK3Q8IV63 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
VRK3Q8IV63 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VRK3Q8IV63 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VRK3Q8IV63 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VRK3Q8IV63 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
VRK3Q8IV63 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VRK3Q8IV63 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VRK3Q8IV63 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VRK3Q8IV63 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.28■■□□□ 1.16
VRK3Q8IV63 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.28■■□□□ 1.16
VRK3Q8IV63 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.28■■□□□ 1.16
VRK3Q8IV63 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
VRK3Q8IV63 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.28■■□□□ 1.16
VRK3Q8IV63 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.28■■□□□ 1.16
VRK3Q8IV63 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.28■■□□□ 1.16
VRK3Q8IV63 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.28■■□□□ 1.16
VRK3Q8IV63 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VRK3Q8IV63 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VRK3Q8IV63 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
VRK3Q8IV63 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VRK3Q8IV63 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.27■■□□□ 1.16
VRK3Q8IV63 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
VRK3Q8IV63 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VRK3Q8IV63 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VRK3Q8IV63 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms