Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 MIR3648-1-201ENST00000615959 180 ntBASIC19.51■□□□□ 0.71
XRCC3O43542 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.51■□□□□ 0.71
XRCC3O43542 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.51■□□□□ 0.71
XRCC3O43542 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
XRCC3O43542 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
XRCC3O43542 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
XRCC3O43542 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
XRCC3O43542 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
XRCC3O43542 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.5■□□□□ 0.71
XRCC3O43542 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.5■□□□□ 0.71
XRCC3O43542 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.5■□□□□ 0.71
XRCC3O43542 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 AC093536.1-201ENST00000569153 554 ntBASIC19.5■□□□□ 0.71
XRCC3O43542 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.5■□□□□ 0.71
XRCC3O43542 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
XRCC3O43542 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.5■□□□□ 0.71
XRCC3O43542 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.5■□□□□ 0.71
XRCC3O43542 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
XRCC3O43542 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.49■□□□□ 0.71
XRCC3O43542 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
XRCC3O43542 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
XRCC3O43542 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.49■□□□□ 0.71
XRCC3O43542 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.49■□□□□ 0.71
XRCC3O43542 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
XRCC3O43542 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
XRCC3O43542 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
XRCC3O43542 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.48■□□□□ 0.71
XRCC3O43542 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.48■□□□□ 0.71
XRCC3O43542 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC3O43542 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.48■□□□□ 0.71
XRCC3O43542 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.47■□□□□ 0.71
XRCC3O43542 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC3O43542 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC3O43542 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC3O43542 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC3O43542 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.47■□□□□ 0.71
XRCC3O43542 ECEL1P2-201ENST00000461596 1295 ntBASIC19.47■□□□□ 0.71
XRCC3O43542 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC3O43542 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC3O43542 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC3O43542 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
XRCC3O43542 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC3O43542 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
XRCC3O43542 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC3O43542 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.46■□□□□ 0.71
XRCC3O43542 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC3O43542 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC3O43542 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.46■□□□□ 0.71
XRCC3O43542 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC3O43542 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC3O43542 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC3O43542 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.45■□□□□ 0.7
XRCC3O43542 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.45■□□□□ 0.7
XRCC3O43542 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
XRCC3O43542 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC3O43542 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.45■□□□□ 0.7
XRCC3O43542 AC242852.2-201ENST00000615738 1807 ntBASIC19.45■□□□□ 0.7
XRCC3O43542 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.45■□□□□ 0.7
XRCC3O43542 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
XRCC3O43542 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC3O43542 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC3O43542 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC3O43542 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC3O43542 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.44■□□□□ 0.7
XRCC3O43542 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC3O43542 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC3O43542 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.44■□□□□ 0.7
XRCC3O43542 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC3O43542 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC3O43542 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.44■□□□□ 0.7
XRCC3O43542 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
XRCC3O43542 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
XRCC3O43542 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.44■□□□□ 0.7
XRCC3O43542 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms