Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.27□□□□□ -0.13
CLDN9O95484 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.27□□□□□ -0.13
CLDN9O95484 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
CLDN9O95484 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CLDN9O95484 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
CLDN9O95484 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
CLDN9O95484 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CLDN9O95484 AC011498.7-201ENST00000624986 2027 ntBASIC14.27□□□□□ -0.13
CLDN9O95484 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.27□□□□□ -0.13
CLDN9O95484 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.27□□□□□ -0.13
CLDN9O95484 AL359881.3-201ENST00000602640 1721 ntBASIC14.27□□□□□ -0.13
CLDN9O95484 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CLDN9O95484 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.26□□□□□ -0.13
CLDN9O95484 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.26□□□□□ -0.13
CLDN9O95484 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CLDN9O95484 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.26□□□□□ -0.13
CLDN9O95484 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.26□□□□□ -0.13
CLDN9O95484 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
CLDN9O95484 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
CLDN9O95484 BEND3P1-201ENST00000421591 1944 ntBASIC14.26□□□□□ -0.13
CLDN9O95484 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.26□□□□□ -0.13
CLDN9O95484 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.26□□□□□ -0.13
CLDN9O95484 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.26□□□□□ -0.13
CLDN9O95484 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.26□□□□□ -0.13
CLDN9O95484 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.26□□□□□ -0.13
CLDN9O95484 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.26□□□□□ -0.13
CLDN9O95484 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 ECM1P1-201ENST00000604092 1279 ntBASIC14.26□□□□□ -0.13
CLDN9O95484 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CLDN9O95484 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.26□□□□□ -0.13
CLDN9O95484 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CLDN9O95484 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
CLDN9O95484 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLDN9O95484 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLDN9O95484 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CLDN9O95484 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
CLDN9O95484 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CLDN9O95484 AL590440.2-201ENST00000641973 1595 ntBASIC14.26□□□□□ -0.13
CLDN9O95484 AC009093.2-202ENST00000620513 2079 ntBASIC14.26□□□□□ -0.13
CLDN9O95484 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.25□□□□□ -0.13
CLDN9O95484 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
CLDN9O95484 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLDN9O95484 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.25□□□□□ -0.13
CLDN9O95484 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
CLDN9O95484 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.25□□□□□ -0.13
CLDN9O95484 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLDN9O95484 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CLDN9O95484 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CLDN9O95484 AC092933.1-201ENST00000393644 945 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms