Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
SIX3O95343 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SIX3O95343 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.43□□□□□ -0.1
SIX3O95343 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 AC103988.2-201ENST00000561804 725 ntBASIC14.43□□□□□ -0.1
SIX3O95343 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.43□□□□□ -0.1
SIX3O95343 MIR5189-201ENST00000577370 114 ntBASIC14.43□□□□□ -0.1
SIX3O95343 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.43□□□□□ -0.1
SIX3O95343 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 AP001002.3-201ENST00000623482 206 ntBASIC14.43□□□□□ -0.1
SIX3O95343 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 AC139712.1-201ENST00000378256 1875 ntBASIC14.43□□□□□ -0.1
SIX3O95343 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.43□□□□□ -0.1
SIX3O95343 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SIX3O95343 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.43□□□□□ -0.1
SIX3O95343 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.43□□□□□ -0.1
SIX3O95343 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SIX3O95343 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SIX3O95343 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
SIX3O95343 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
SIX3O95343 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SIX3O95343 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SIX3O95343 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.42□□□□□ -0.1
SIX3O95343 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
SIX3O95343 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.42□□□□□ -0.1
SIX3O95343 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.42□□□□□ -0.1
SIX3O95343 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 ACTG1P3-201ENST00000431775 1114 ntBASIC14.42□□□□□ -0.1
SIX3O95343 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 AC106760.1-201ENST00000508690 800 ntBASIC14.42□□□□□ -0.1
SIX3O95343 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 TDH-203ENST00000531764 1110 ntBASIC14.42□□□□□ -0.1
SIX3O95343 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.42□□□□□ -0.1
SIX3O95343 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.42□□□□□ -0.1
SIX3O95343 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.42□□□□□ -0.1
SIX3O95343 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.42□□□□□ -0.1
SIX3O95343 AC010319.3-201ENST00000597028 470 ntBASIC14.42□□□□□ -0.1
SIX3O95343 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.42□□□□□ -0.1
SIX3O95343 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.42□□□□□ -0.1
SIX3O95343 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SIX3O95343 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SIX3O95343 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.42□□□□□ -0.1
SIX3O95343 AC079781.5-202ENST00000641784 3743 ntBASIC14.42□□□□□ -0.1
SIX3O95343 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SIX3O95343 KHSRPP1-201ENST00000427983 1768 ntBASIC14.42□□□□□ -0.1
SIX3O95343 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.41□□□□□ -0.1
SIX3O95343 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.41□□□□□ -0.1
SIX3O95343 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
SIX3O95343 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.41□□□□□ -0.1
SIX3O95343 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 MBLAC2-202ENST00000514906 1936 ntBASIC14.41□□□□□ -0.1
SIX3O95343 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SIX3O95343 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SIX3O95343 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms