Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TPM4P67936 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TPM4P67936 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TPM4P67936 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TPM4P67936 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TPM4P67936 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.62■□□□□ 0.25
TPM4P67936 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
TPM4P67936 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC16.61■□□□□ 0.25
TPM4P67936 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 AC099521.3-201ENST00000624251 2938 ntBASIC16.61■□□□□ 0.25
TPM4P67936 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.61■□□□□ 0.25
TPM4P67936 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 REXO1L1P-201ENST00000379010 6598 ntBASIC16.61■□□□□ 0.25
TPM4P67936 MAPT-IT1-201ENST00000624111 3016 ntBASIC16.61■□□□□ 0.25
TPM4P67936 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.61■□□□□ 0.25
TPM4P67936 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.61■□□□□ 0.25
TPM4P67936 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.61■□□□□ 0.25
TPM4P67936 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.61■□□□□ 0.25
TPM4P67936 AC044860.1-202ENST00000559481 777 ntBASIC16.61■□□□□ 0.25
TPM4P67936 AC092337.1-201ENST00000568699 1129 ntBASIC16.61■□□□□ 0.25
TPM4P67936 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.61■□□□□ 0.25
TPM4P67936 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TPM4P67936 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC16.61■□□□□ 0.25
TPM4P67936 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
TPM4P67936 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 MEX3B-202ENST00000558133 4333 ntBASIC16.61■□□□□ 0.25
TPM4P67936 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC16.61■□□□□ 0.25
TPM4P67936 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TPM4P67936 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TPM4P67936 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 LSS-211ENST00000522411 2523 ntTSL 2 BASIC16.6■□□□□ 0.25
TPM4P67936 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
TPM4P67936 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC16.6■□□□□ 0.25
TPM4P67936 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TPM4P67936 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TPM4P67936 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.6■□□□□ 0.25
TPM4P67936 MEIS3P1-201ENST00000495167 958 ntBASIC16.6■□□□□ 0.25
TPM4P67936 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.6■□□□□ 0.25
TPM4P67936 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.6■□□□□ 0.25
TPM4P67936 AC107373.2-201ENST00000607735 490 ntBASIC16.6■□□□□ 0.25
TPM4P67936 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.6■□□□□ 0.25
TPM4P67936 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
TPM4P67936 AC087499.5-201ENST00000452760 1342 ntBASIC16.6■□□□□ 0.25
TPM4P67936 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.6■□□□□ 0.25
TPM4P67936 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TPM4P67936 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.6■□□□□ 0.25
TPM4P67936 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.6■□□□□ 0.25
TPM4P67936 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.6■□□□□ 0.25
TPM4P67936 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM4P67936 CSPG4P11-201ENST00000560634 4910 ntBASIC16.59■□□□□ 0.25
TPM4P67936 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 AC215219.1-201ENST00000400706 1817 ntBASIC16.59■□□□□ 0.25
TPM4P67936 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 PTPRVP-205ENST00000641549 5067 ntBASIC16.59■□□□□ 0.25
TPM4P67936 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms