Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 RPL5P21-201ENST00000404620 815 ntBASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 RN7SL578P-201ENST00000477781 283 ntBASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
CSMD3Q7Z407 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 ZEB1-AS1-208ENST00000607166 2503 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 RN7SL288P-201ENST00000490496 291 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 KNOP1P1-201ENST00000542108 989 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC023968.2-201ENST00000560593 1049 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC004466.2-201ENST00000614749 516 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PKD1P6-201ENST00000343738 4769 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 FES-203ENST00000394302 2133 ntTSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AL035414.1-201ENST00000451327 857 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC005740.1-201ENST00000515639 522 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 GAS7-216ENST00000583882 553 ntTSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC010531.8-201ENST00000623341 685 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC005274.1-201ENST00000623460 802 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AL136172.1-201ENST00000598590 1394 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC104961.1-201ENST00000427605 771 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 HNRNPA1P2-207ENST00000432375 960 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 AC110057.1-201ENST00000636031 898 ntBASIC9.97□□□□□ -0.81
CSMD3Q7Z407 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC9.97□□□□□ -0.81
CSMD3Q7Z407 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC9.96□□□□□ -0.81
CSMD3Q7Z407 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
CSMD3Q7Z407 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
CSMD3Q7Z407 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
CSMD3Q7Z407 BAX-205ENST00000391871 687 ntTSL 5 BASIC9.96□□□□□ -0.81
CSMD3Q7Z407 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
CSMD3Q7Z407 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC9.96□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms