Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 AC106820.3-201ENST00000561653 397 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 AC005586.2-201ENST00000563946 837 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 LINC02560-201ENST00000596379 459 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 AC130686.1-201ENST00000622936 2466 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 MSTO2P-201ENST00000314835 1709 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 AC068587.3-201ENST00000526613 355 ntBASIC16.81■□□□□ 0.28
ATL3Q6DD88 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 AC008825.2-201ENST00000603374 718 ntBASIC16.81■□□□□ 0.28
ATL3Q6DD88 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.81■□□□□ 0.28
ATL3Q6DD88 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ATL3Q6DD88 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATL3Q6DD88 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 TPM3P8-201ENST00000330554 643 ntBASIC16.8■□□□□ 0.28
ATL3Q6DD88 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 AL035414.1-201ENST00000451327 857 ntBASIC16.8■□□□□ 0.28
ATL3Q6DD88 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.8■□□□□ 0.28
ATL3Q6DD88 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATL3Q6DD88 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms