Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC234783.1-201ENST00000441761 496 ntBASIC14.92□□□□□ -0.02
PTPN4P29074 AC022210.1-201ENST00000449856 793 ntBASIC14.92□□□□□ -0.02
PTPN4P29074 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.92□□□□□ -0.02
PTPN4P29074 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.92□□□□□ -0.02
PTPN4P29074 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 AL512343.1-201ENST00000605837 169 ntBASIC14.92□□□□□ -0.02
PTPN4P29074 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 AC012508.2-201ENST00000567613 1472 ntBASIC14.92□□□□□ -0.02
PTPN4P29074 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.92□□□□□ -0.02
PTPN4P29074 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN4P29074 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN4P29074 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.92□□□□□ -0.02
PTPN4P29074 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
PTPN4P29074 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
PTPN4P29074 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 AL607033.1-201ENST00000623900 1599 ntBASIC14.91□□□□□ -0.02
PTPN4P29074 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.91□□□□□ -0.02
PTPN4P29074 TMEM14DP-201ENST00000422205 345 ntBASIC14.91□□□□□ -0.02
PTPN4P29074 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.91□□□□□ -0.02
PTPN4P29074 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.91□□□□□ -0.02
PTPN4P29074 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 AL391069.4-201ENST00000609583 481 ntBASIC14.91□□□□□ -0.02
PTPN4P29074 AL158212.4-201ENST00000624062 1286 ntBASIC14.91□□□□□ -0.02
PTPN4P29074 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
PTPN4P29074 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
PTPN4P29074 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
PTPN4P29074 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.91□□□□□ -0.02
PTPN4P29074 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN4P29074 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN4P29074 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.9□□□□□ -0.02
PTPN4P29074 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 AC007787.1-201ENST00000588095 1583 ntBASIC14.9□□□□□ -0.02
PTPN4P29074 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTPN4P29074 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.9□□□□□ -0.02
PTPN4P29074 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms