Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 AC010141.1-201ENST00000411585 623 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 AC007274.2-201ENST00000421675 662 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 RPL18P13-201ENST00000478088 569 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 AC125604.1-201ENST00000496255 707 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 MIR4722-201ENST00000578292 60 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 AL133499.1-201ENST00000596207 608 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 AC079336.7-201ENST00000623428 1078 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 AC012508.2-201ENST00000567613 1472 ntBASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 PUDPP3-201ENST00000445368 636 ntBASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 PARP8-206ENST00000503665 572 ntTSL 4 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AL157791.1-201ENST00000553667 1699 ntBASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 LINC00528-201ENST00000600723 2160 ntBASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AC007191.1-201ENST00000623179 2995 ntBASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AL353726.2-201ENST00000623259 884 ntBASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AC128714.1-201ENST00000637035 887 ntBASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.79□□□□□ -0.04
TM9SF3Q9HD45 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.78□□□□□ -0.04
TM9SF3Q9HD45 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms