Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC23.91■■□□□ 1.42
CUX1P39880 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
CUX1P39880 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC23.91■■□□□ 1.42
CUX1P39880 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
CUX1P39880 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC23.91■■□□□ 1.42
CUX1P39880 AC092896.1-201ENST00000465850 380 ntBASIC23.91■■□□□ 1.42
CUX1P39880 SEPHS2P1-201ENST00000511618 1162 ntBASIC23.91■■□□□ 1.42
CUX1P39880 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC23.91■■□□□ 1.42
CUX1P39880 AC068831.5-201ENST00000557387 328 ntBASIC23.91■■□□□ 1.42
CUX1P39880 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC23.91■■□□□ 1.42
CUX1P39880 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC23.91■■□□□ 1.42
CUX1P39880 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC23.91■■□□□ 1.42
CUX1P39880 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC23.91■■□□□ 1.42
CUX1P39880 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC23.91■■□□□ 1.42
CUX1P39880 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUX1P39880 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC23.9■■□□□ 1.42
CUX1P39880 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC23.9■■□□□ 1.42
CUX1P39880 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC23.9■■□□□ 1.42
CUX1P39880 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC23.9■■□□□ 1.42
CUX1P39880 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC23.9■■□□□ 1.42
CUX1P39880 KRT18P62-201ENST00000446618 1287 ntBASIC23.9■■□□□ 1.42
CUX1P39880 AC126755.5-201ENST00000622756 267 ntBASIC23.9■■□□□ 1.42
CUX1P39880 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC23.9■■□□□ 1.42
CUX1P39880 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 SHMT1P1-201ENST00000419974 1312 ntBASIC23.9■■□□□ 1.42
CUX1P39880 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC23.9■■□□□ 1.42
CUX1P39880 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC23.9■■□□□ 1.42
CUX1P39880 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
CUX1P39880 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC23.9■■□□□ 1.42
CUX1P39880 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CUX1P39880 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC23.89■■□□□ 1.42
CUX1P39880 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC23.89■■□□□ 1.42
CUX1P39880 BATF-202ENST00000555504 361 ntTSL 2 BASIC23.89■■□□□ 1.42
CUX1P39880 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC23.89■■□□□ 1.42
CUX1P39880 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CUX1P39880 ENPP7P8-202ENST00000527856 1345 ntBASIC23.89■■□□□ 1.42
CUX1P39880 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC23.89■■□□□ 1.42
CUX1P39880 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
CUX1P39880 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC23.89■■□□□ 1.42
CUX1P39880 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CUX1P39880 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CUX1P39880 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
CUX1P39880 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
CUX1P39880 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC23.89■■□□□ 1.41
CUX1P39880 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC23.89■■□□□ 1.41
CUX1P39880 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CUX1P39880 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC23.89■■□□□ 1.41
CUX1P39880 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
CUX1P39880 AF274858.1-201ENST00000406288 372 ntBASIC23.89■■□□□ 1.41
CUX1P39880 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CUX1P39880 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC23.89■■□□□ 1.41
CUX1P39880 RN7SL288P-201ENST00000490496 291 ntBASIC23.89■■□□□ 1.41
CUX1P39880 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC23.89■■□□□ 1.41
CUX1P39880 KNOP1P1-201ENST00000542108 989 ntBASIC23.89■■□□□ 1.41
CUX1P39880 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
CUX1P39880 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC23.89■■□□□ 1.41
CUX1P39880 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC23.89■■□□□ 1.41
CUX1P39880 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CUX1P39880 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC23.89■■□□□ 1.41
CUX1P39880 FKBP4P8-201ENST00000610931 1369 ntBASIC23.89■■□□□ 1.41
CUX1P39880 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
CUX1P39880 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC23.89■■□□□ 1.41
CUX1P39880 MPI-203ENST00000535694 1523 ntTSL 2 BASIC23.89■■□□□ 1.41
CUX1P39880 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC23.88■■□□□ 1.41
CUX1P39880 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 AC018529.2-202ENST00000611482 3087 ntBASIC23.88■■□□□ 1.41
CUX1P39880 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC23.88■■□□□ 1.41
CUX1P39880 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUX1P39880 HNRNPA1P58-201ENST00000403629 610 ntBASIC23.88■■□□□ 1.41
CUX1P39880 AC092570.1-201ENST00000414446 469 ntBASIC23.88■■□□□ 1.41
CUX1P39880 PGAM1P11-201ENST00000416729 680 ntBASIC23.88■■□□□ 1.41
CUX1P39880 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms