Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 GCOM2-201ENST00000509133 1104 ntBASIC13.41□□□□□ -0.26
FREM3P0C091 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.41□□□□□ -0.26
FREM3P0C091 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.41□□□□□ -0.26
FREM3P0C091 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 AC138696.2-201ENST00000607376 223 ntBASIC13.41□□□□□ -0.26
FREM3P0C091 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.41□□□□□ -0.26
FREM3P0C091 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
FREM3P0C091 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.41□□□□□ -0.26
FREM3P0C091 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.41□□□□□ -0.26
FREM3P0C091 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FREM3P0C091 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.41□□□□□ -0.26
FREM3P0C091 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
FREM3P0C091 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
FREM3P0C091 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 AL157407.1-201ENST00000435784 904 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.4□□□□□ -0.26
FREM3P0C091 SCARNA20.5-201ENST00000516991 142 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.4□□□□□ -0.26
FREM3P0C091 AC090164.2-201ENST00000611487 516 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.4□□□□□ -0.26
FREM3P0C091 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.4□□□□□ -0.26
FREM3P0C091 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.4□□□□□ -0.26
FREM3P0C091 AC138028.6-201ENST00000616106 1482 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 AC113367.3-201ENST00000508316 1912 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.4□□□□□ -0.26
FREM3P0C091 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.4□□□□□ -0.26
FREM3P0C091 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.4□□□□□ -0.26
FREM3P0C091 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
FREM3P0C091 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 AC005089.1-201ENST00000619486 2241 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
FREM3P0C091 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.4□□□□□ -0.26
FREM3P0C091 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.4□□□□□ -0.26
FREM3P0C091 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 AC007663.3-201ENST00000609632 465 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 AC138649.2-201ENST00000615886 705 ntBASIC13.4□□□□□ -0.26
FREM3P0C091 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.4□□□□□ -0.26
FREM3P0C091 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.4□□□□□ -0.26
FREM3P0C091 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FREM3P0C091 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.27
FREM3P0C091 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
FREM3P0C091 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.39□□□□□ -0.27
FREM3P0C091 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
FREM3P0C091 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FREM3P0C091 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.39□□□□□ -0.27
FREM3P0C091 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FREM3P0C091 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FREM3P0C091 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FREM3P0C091 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.39□□□□□ -0.27
FREM3P0C091 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FREM3P0C091 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms