Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
SCN1BQ07699 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 FAM90A12P-201ENST00000519497 2375 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 FAM90A24P-201ENST00000520792 2369 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 MIR497HG-202ENST00000572453 3838 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
SCN1BQ07699 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 GPS2P2-201ENST00000430745 888 ntBASIC13.28□□□□□ -0.28
SCN1BQ07699 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC13.28□□□□□ -0.28
SCN1BQ07699 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13.28□□□□□ -0.28
SCN1BQ07699 AC097359.3-201ENST00000603982 1210 ntBASIC13.28□□□□□ -0.28
SCN1BQ07699 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.28□□□□□ -0.28
SCN1BQ07699 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC13.28□□□□□ -0.28
SCN1BQ07699 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SCN1BQ07699 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
SCN1BQ07699 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.27□□□□□ -0.28
SCN1BQ07699 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.27□□□□□ -0.28
SCN1BQ07699 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 AC090505.1-201ENST00000430515 1834 ntBASIC13.27□□□□□ -0.28
SCN1BQ07699 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
SCN1BQ07699 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
SCN1BQ07699 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.27□□□□□ -0.28
SCN1BQ07699 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.28
SCN1BQ07699 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms