Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
LMO4P61968 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 CAP2P1-201ENST00000557743 1390 ntBASIC12.04□□□□□ -0.48
LMO4P61968 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
LMO4P61968 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.03□□□□□ -0.48
LMO4P61968 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
LMO4P61968 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
LMO4P61968 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 RPL8P2-201ENST00000430538 502 ntBASIC12.03□□□□□ -0.48
LMO4P61968 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 AC069218.1-201ENST00000435269 762 ntBASIC12.03□□□□□ -0.48
LMO4P61968 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.03□□□□□ -0.48
LMO4P61968 FGFR3P1-201ENST00000449999 601 ntBASIC12.03□□□□□ -0.48
LMO4P61968 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.03□□□□□ -0.48
LMO4P61968 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC12.03□□□□□ -0.48
LMO4P61968 DRG2-220ENST00000583355 891 ntTSL 3 BASIC12.03□□□□□ -0.48
LMO4P61968 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 AC103810.10-201ENST00000606504 343 ntBASIC12.03□□□□□ -0.48
LMO4P61968 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC12.03□□□□□ -0.48
LMO4P61968 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC12.03□□□□□ -0.48
LMO4P61968 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC12.03□□□□□ -0.48
LMO4P61968 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC12.03□□□□□ -0.48
LMO4P61968 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC12.03□□□□□ -0.48
LMO4P61968 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC12.03□□□□□ -0.48
LMO4P61968 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
LMO4P61968 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.03□□□□□ -0.48
LMO4P61968 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
LMO4P61968 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.03□□□□□ -0.48
LMO4P61968 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LMO4P61968 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.02□□□□□ -0.48
LMO4P61968 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
LMO4P61968 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.48
LMO4P61968 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LMO4P61968 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LMO4P61968 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LMO4P61968 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC12.02□□□□□ -0.48
LMO4P61968 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
LMO4P61968 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC12.02□□□□□ -0.48
LMO4P61968 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
LMO4P61968 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC12.02□□□□□ -0.49
LMO4P61968 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
LMO4P61968 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC12.02□□□□□ -0.49
LMO4P61968 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms