Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 AC099521.3-201ENST00000624251 2938 ntBASIC15.43■□□□□ 0.06
CCDC188H7C350 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.43■□□□□ 0.06
CCDC188H7C350 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.43■□□□□ 0.06
CCDC188H7C350 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.43■□□□□ 0.06
CCDC188H7C350 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CCDC188H7C350 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC188H7C350 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
CCDC188H7C350 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 AC138969.2-201ENST00000532739 9932 ntBASIC15.42■□□□□ 0.06
CCDC188H7C350 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC188H7C350 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CCDC188H7C350 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 UPF3AP3-201ENST00000420996 769 ntBASIC15.42■□□□□ 0.06
CCDC188H7C350 AC092580.3-201ENST00000430932 139 ntBASIC15.42■□□□□ 0.06
CCDC188H7C350 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 AC114812.1-204ENST00000449669 728 ntBASIC15.42■□□□□ 0.06
CCDC188H7C350 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC188H7C350 GIMAP3P-201ENST00000495150 836 ntBASIC15.42■□□□□ 0.06
CCDC188H7C350 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.42■□□□□ 0.06
CCDC188H7C350 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.42■□□□□ 0.06
CCDC188H7C350 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC188H7C350 AL158211.3-201ENST00000607385 239 ntBASIC15.42■□□□□ 0.06
CCDC188H7C350 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC188H7C350 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 AC100757.3-201ENST00000622361 1406 ntBASIC15.42■□□□□ 0.06
CCDC188H7C350 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CCDC188H7C350 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC188H7C350 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC188H7C350 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC188H7C350 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC188H7C350 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC188H7C350 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC188H7C350 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC188H7C350 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
CCDC188H7C350 AC107890.1-201ENST00000422478 521 ntBASIC15.41■□□□□ 0.06
CCDC188H7C350 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.41■□□□□ 0.06
CCDC188H7C350 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC188H7C350 AC009477.1-201ENST00000452936 217 ntBASIC15.41■□□□□ 0.06
CCDC188H7C350 AL589987.1-201ENST00000453380 819 ntBASIC15.41■□□□□ 0.06
CCDC188H7C350 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC188H7C350 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.41■□□□□ 0.06
CCDC188H7C350 AC015911.4-201ENST00000588022 1070 ntBASIC15.41■□□□□ 0.06
CCDC188H7C350 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC188H7C350 AC007431.3-201ENST00000623221 587 ntBASIC15.41■□□□□ 0.06
CCDC188H7C350 AL590560.3-201ENST00000623350 461 ntBASIC15.41■□□□□ 0.06
CCDC188H7C350 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC188H7C350 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC188H7C350 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC188H7C350 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC188H7C350 SLC6A6P1-201ENST00000413933 1850 ntBASIC15.41■□□□□ 0.06
CCDC188H7C350 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC188H7C350 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
CCDC188H7C350 CICP20-201ENST00000443330 2801 ntBASIC15.41■□□□□ 0.06
CCDC188H7C350 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms