Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SIRPB3P-201ENST00000340424 1216 ntBASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 CD44-224ENST00000526669 870 ntTSL 5 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 AC087203.1-201ENST00000532111 1181 ntBASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SKA2-205ENST00000580541 689 ntTSL 3 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 AC020931.1-201ENST00000589622 1346 ntBASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 MTHFR-210ENST00000641407 2387 ntBASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
VPS13DQ5THJ4 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC9.59□□□□□ -0.88
VPS13DQ5THJ4 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC9.59□□□□□ -0.88
VPS13DQ5THJ4 HLA-DPA2-205ENST00000433582 733 ntBASIC9.59□□□□□ -0.88
VPS13DQ5THJ4 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.88
VPS13DQ5THJ4 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC9.59□□□□□ -0.88
VPS13DQ5THJ4 NAV1-210ENST00000593583 726 ntBASIC9.59□□□□□ -0.88
VPS13DQ5THJ4 LINC00244-201ENST00000625073 613 ntBASIC9.59□□□□□ -0.88
VPS13DQ5THJ4 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC9.59□□□□□ -0.88
VPS13DQ5THJ4 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 AC025594.1-201ENST00000469533 543 ntBASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 AL031673.1-201ENST00000611460 466 ntBASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 AC026336.4-201ENST00000624565 1050 ntBASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 SNORD3B-1-201ENST00000577988 758 ntBASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 AC021016.3-201ENST00000608367 477 ntBASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
VPS13DQ5THJ4 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC9.58□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms