Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC10.25□□□□□ -0.77
PRKDCP78527 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 GAS5-209ENST00000430245 723 ntTSL 3 BASIC10.25□□□□□ -0.77
PRKDCP78527 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC10.25□□□□□ -0.77
PRKDCP78527 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC10.25□□□□□ -0.77
PRKDCP78527 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
PRKDCP78527 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC10.25□□□□□ -0.77
PRKDCP78527 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
PRKDCP78527 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC10.25□□□□□ -0.77
PRKDCP78527 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 HNRNPA1P7-201ENST00000521273 963 ntBASIC10.25□□□□□ -0.77
PRKDCP78527 ALG10-202ENST00000538927 571 ntTSL 5 BASIC10.25□□□□□ -0.77
PRKDCP78527 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC10.25□□□□□ -0.77
PRKDCP78527 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC10.25□□□□□ -0.77
PRKDCP78527 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
PRKDCP78527 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC10.25□□□□□ -0.77
PRKDCP78527 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 PCDHA12-202ENST00000613593 2588 ntBASIC10.25□□□□□ -0.77
PRKDCP78527 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 Z98885.3-201ENST00000624882 1757 ntBASIC10.25□□□□□ -0.77
PRKDCP78527 PRAL-201ENST00000624952 3286 ntBASIC10.25□□□□□ -0.77
PRKDCP78527 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 DNM1P46-202ENST00000415963 882 ntBASIC10.24□□□□□ -0.77
PRKDCP78527 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC10.24□□□□□ -0.77
PRKDCP78527 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC10.24□□□□□ -0.77
PRKDCP78527 MIR1587-201ENST00000583319 53 ntBASIC10.24□□□□□ -0.77
PRKDCP78527 PSME3-213ENST00000592169 826 ntTSL 3 BASIC10.24□□□□□ -0.77
PRKDCP78527 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 TP73-207ENST00000378290 1831 ntTSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC10.24□□□□□ -0.77
PRKDCP78527 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 AC092115.1-201ENST00000566277 1402 ntBASIC10.24□□□□□ -0.77
PRKDCP78527 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC10.24□□□□□ -0.77
PRKDCP78527 LINC02344-201ENST00000443576 644 ntTSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 SRPK2P-201ENST00000523408 1100 ntBASIC10.24□□□□□ -0.77
PRKDCP78527 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 BID-213ENST00000615414 2236 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC10.24□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms