RNA–Protein interactions for RNA: ENST00000394767.2

CXXC4-201, Transcript of CXXC finger protein 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CXXC4, Length 5,565 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXXC4-201ENST00000394767 NISCHQ9Y2I1 1504 aa37.92■■■■□ 3.66
CXXC4-201ENST00000394767 DCAF8L2P0C7V8 631 aa36.21■■■■□ 3.39
CXXC4-201ENST00000394767 SHROOM4Q9ULL8 1493 aa33.97■■■■□ 3.03
CXXC4-201ENST00000394767 SUPT5HO00267 1087 aaKnown RBP33.56■■■□□ 2.96
CXXC4-201ENST00000394767 ABCC9O60706 1549 aa32.88■■■□□ 2.85
CXXC4-201ENST00000394767 CCDC180Q9P1Z9 1646 aa31.97■■■□□ 2.71
CXXC4-201ENST00000394767 PABPN1Q86U42 306 aaKnown RBP eCLIP31.97■■■□□ 2.71
CXXC4-201ENST00000394767 EHMT2Q96KQ7 1210 aa31.78■■■□□ 2.68
CXXC4-201ENST00000394767 FAM9AQ8IZU1 332 aaPredicted RBP31.43■■■□□ 2.62
CXXC4-201ENST00000394767 ZCCHC6Q5VYS8 1495 aaKnown RBP31.43■■■□□ 2.62
CXXC4-201ENST00000394767 TRIM41Q8WV44 630 aa31.28■■■□□ 2.6
CXXC4-201ENST00000394767 SCRIBQ14160 1630 aa31.11■■■□□ 2.57
CXXC4-201ENST00000394767 RB1CC1Q8TDY2 1594 aa30.99■■■□□ 2.55
CXXC4-201ENST00000394767 RANGAP1P46060 587 aaPredicted RBP30.85■■■□□ 2.53
CXXC4-201ENST00000394767 NACADO15069 1562 aa30.81■■■□□ 2.52
CXXC4-201ENST00000394767 APLP2Q06481 763 aa30.78■■■□□ 2.52
CXXC4-201ENST00000394767 UBTFP17480 764 aaKnown RBP30.63■■■□□ 2.49
CXXC4-201ENST00000394767 ATP1B4Q9UN42 357 aaPredicted RBP30.43■■■□□ 2.46
CXXC4-201ENST00000394767 TTBK1Q5TCY1 1321 aaPredicted RBP30.41■■■□□ 2.46
CXXC4-201ENST00000394767 DCAF1Q9Y4B6 1507 aa30.38■■■□□ 2.45
CXXC4-201ENST00000394767 CHIC1Q5VXU3 224 aa30.35■■■□□ 2.45
CXXC4-201ENST00000394767 LOC105371045A0A1W2PR82 267 aa29.91■■■□□ 2.38
CXXC4-201ENST00000394767 MYO15BQ96JP2 1530 aa29.87■■■□□ 2.37
CXXC4-201ENST00000394767 RSF1Q96T23 1441 aaPredicted RBP29.85■■■□□ 2.37
CXXC4-201ENST00000394767 FBLN2P98095 1184 aa29.78■■■□□ 2.36
CXXC4-201ENST00000394767 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.78■■■□□ 2.36
CXXC4-201ENST00000394767 HNRNPUL2Q1KMD3 747 aaKnown RBP29.78■■■□□ 2.36
CXXC4-201ENST00000394767 CECR2Q9BXF3 1484 aa29.76■■■□□ 2.36
CXXC4-201ENST00000394767 BAZ1BQ9UIG0 1483 aaKnown RBP29.69■■■□□ 2.34
CXXC4-201ENST00000394767 PPARGC1BQ86YN6 1023 aaKnown RBP29.69■■■□□ 2.34
CXXC4-201ENST00000394767 PCGF6Q9BYE7 350 aa29.68■■■□□ 2.34
CXXC4-201ENST00000394767 BAZ1AQ9NRL2 1556 aaPredicted RBP29.65■■■□□ 2.34
CXXC4-201ENST00000394767 CSRNP3Q8WYN3 585 aa29.4■■■□□ 2.3
CXXC4-201ENST00000394767 MROH2BQ7Z745 1585 aa29.35■■■□□ 2.29
CXXC4-201ENST00000394767 MYT1LQ9UL68 1186 aa29.29■■■□□ 2.28
CXXC4-201ENST00000394767 ITGAEP38570 1179 aa29.22■■■□□ 2.27
CXXC4-201ENST00000394767 SMARCA2P51531 1590 aa29.18■■■□□ 2.26
CXXC4-201ENST00000394767 P3H3Q8IVL6 736 aa29.17■■■□□ 2.26
CXXC4-201ENST00000394767 ERCC6Q03468 1493 aa29.15■■■□□ 2.26
CXXC4-201ENST00000394767 CCER1Q8TC90 406 aaPredicted RBP29.14■■■□□ 2.26
CXXC4-201ENST00000394767 WRNQ14191 1432 aaPredicted RBP eCLIP29■■■□□ 2.23
CXXC4-201ENST00000394767 CHMP7Q8WUX9 453 aaPredicted RBP28.98■■■□□ 2.23
CXXC4-201ENST00000394767 ARID3CA6NKF2 412 aa28.98■■■□□ 2.23
CXXC4-201ENST00000394767 ATAD2BQ9ULI0 1458 aa28.97■■■□□ 2.23
CXXC4-201ENST00000394767 TRIM26Q12899 539 aaPredicted RBP28.97■■■□□ 2.23
CXXC4-201ENST00000394767 CCDC88BA6NC98 1476 aa28.94■■■□□ 2.22
CXXC4-201ENST00000394767 WIZO95785 1651 aa28.92■■■□□ 2.22
CXXC4-201ENST00000394767 SMARCA4P51532 1647 aa28.89■■■□□ 2.22
CXXC4-201ENST00000394767 FAM50AQ14320 339 aaKnown RBP28.82■■■□□ 2.2
CXXC4-201ENST00000394767 PDS5BQ9NTI5 1447 aa28.79■■■□□ 2.2
CXXC4-201ENST00000394767 TOP2AP11388 1531 aaKnown RBP28.77■■■□□ 2.2
CXXC4-201ENST00000394767 CADPSQ9ULU8 1353 aa28.72■■■□□ 2.19
CXXC4-201ENST00000394767 EIF4G1Q04637 1599 aaKnown RBP28.69■■■□□ 2.18
CXXC4-201ENST00000394767 ZEB1P37275 1124 aaPredicted RBP28.66■■■□□ 2.18
CXXC4-201ENST00000394767 KIF27Q86VH2 1401 aa28.65■■■□□ 2.18
CXXC4-201ENST00000394767 NPM1P06748 294 aaKnown RBP eCLIP28.61■■■□□ 2.17
CXXC4-201ENST00000394767 CDK11AQ9UQ88 783 aaPredicted RBP28.61■■■□□ 2.17
CXXC4-201ENST00000394767 EEA1Q15075 1411 aa28.54■■■□□ 2.16
CXXC4-201ENST00000394767 NCAPD3P42695 1498 aa28.51■■■□□ 2.15
CXXC4-201ENST00000394767 ZNF777Q9ULD5 760 aaPredicted RBP28.47■■■□□ 2.15
CXXC4-201ENST00000394767 CUX2O14529 1486 aa28.47■■■□□ 2.15
CXXC4-201ENST00000394767 ABCC8Q09428 1581 aa28.44■■■□□ 2.14
CXXC4-201ENST00000394767 BICRAQ9NZM4 1560 aa28.41■■■□□ 2.14
CXXC4-201ENST00000394767 TRIM52Q96A61 297 aa28.41■■■□□ 2.14
CXXC4-201ENST00000394767 SOGA1O94964 1423 aa28.4■■■□□ 2.14
CXXC4-201ENST00000394767 CEP164Q9UPV0 1460 aa28.37■■■□□ 2.13
CXXC4-201ENST00000394767 TDRD9Q8NDG6 1382 aaKnown RBP28.37■■■□□ 2.13
CXXC4-201ENST00000394767 GOLGA3Q08378 1498 aa28.34■■■□□ 2.13
CXXC4-201ENST00000394767 CC2D2AQ9P2K1 1620 aa28.34■■■□□ 2.13
CXXC4-201ENST00000394767 CLIP1P30622 1438 aa28.33■■■□□ 2.13
CXXC4-201ENST00000394767 FANCD2Q9BXW9 1451 aa28.32■■■□□ 2.12
CXXC4-201ENST00000394767 CARMIL1Q5VZK9 1371 aa28.3■■■□□ 2.12
CXXC4-201ENST00000394767 DNAJC5BQ9UF47 199 aa28.27■■■□□ 2.12
CXXC4-201ENST00000394767 MTUS2Q5JR59 1369 aa28.14■■■□□ 2.1
CXXC4-201ENST00000394767 KCNH8Q96L42 1107 aa28.13■■■□□ 2.09
CXXC4-201ENST00000394767 CEP162Q5TB80 1403 aa28.12■■■□□ 2.09
CXXC4-201ENST00000394767 TNIKQ9UKE5 1360 aa28.08■■■□□ 2.09
CXXC4-201ENST00000394767 PLEKHD1A6NEE1 506 aa28.07■■■□□ 2.08
CXXC4-201ENST00000394767 POLR3GLQ9BT43 218 aa28.05■■■□□ 2.08
CXXC4-201ENST00000394767 NEUROD1Q13562 356 aa28.02■■■□□ 2.08
CXXC4-201ENST00000394767 UNC13AQ9UPW8 1703 aa28.02■■■□□ 2.08
CXXC4-201ENST00000394767 HMGXB3Q12766 1538 aa28.01■■■□□ 2.07
CXXC4-201ENST00000394767 NESP48681 1621 aa28.01■■■□□ 2.07
CXXC4-201ENST00000394767 CHIC2Q9UKJ5 165 aa27.93■■■□□ 2.06
CXXC4-201ENST00000394767 ESF1Q9H501 851 aaKnown RBP27.9■■■□□ 2.06
CXXC4-201ENST00000394767 CFTRP13569 1480 aa27.9■■■□□ 2.06
CXXC4-201ENST00000394767 TSPY4P0CV99 314 aa27.88■■■□□ 2.05
CXXC4-201ENST00000394767 TSPY10P0CW01 314 aa27.88■■■□□ 2.05
CXXC4-201ENST00000394767 FGD5Q6ZNL6 1462 aa27.85■■■□□ 2.05
CXXC4-201ENST00000394767 ZNF326Q5BKZ1 582 aaKnown RBP27.83■■■□□ 2.05
CXXC4-201ENST00000394767 HRCP23327 699 aa27.81■■■□□ 2.04
CXXC4-201ENST00000394767 RAD54L2Q9Y4B4 1467 aa27.81■■■□□ 2.04
CXXC4-201ENST00000394767 CARMIL2Q6F5E8 1435 aa27.78■■■□□ 2.04
CXXC4-201ENST00000394767 PLPPR3Q6T4P5 718 aa27.78■■■□□ 2.04
CXXC4-201ENST00000394767 RAPGEF2Q9Y4G8 1499 aa27.74■■■□□ 2.03
CXXC4-201ENST00000394767 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.73■■■□□ 2.03
CXXC4-201ENST00000394767 CFDP1Q9UEE9 299 aaPredicted RBP27.72■■■□□ 2.03
CXXC4-201ENST00000394767 JPH4Q96JJ6 628 aa27.72■■■□□ 2.03
CXXC4-201ENST00000394767 CNGB1Q14028 1251 aaPredicted RBP27.71■■■□□ 2.03
CXXC4-201ENST00000394767 RUSC2Q8N2Y8 1516 aa27.71■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms