Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC15.4■□□□□ 0.06
COL4A4P53420 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
COL4A4P53420 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL4A4P53420 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
COL4A4P53420 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL4A4P53420 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.4■□□□□ 0.06
COL4A4P53420 AL136172.1-201ENST00000598590 1394 ntBASIC15.39■□□□□ 0.05
COL4A4P53420 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.39■□□□□ 0.05
COL4A4P53420 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC15.39■□□□□ 0.05
COL4A4P53420 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 TREHP1-201ENST00000531328 465 ntBASIC15.39■□□□□ 0.05
COL4A4P53420 OR5BD1P-201ENST00000532527 817 ntBASIC15.39■□□□□ 0.05
COL4A4P53420 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC15.39■□□□□ 0.05
COL4A4P53420 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC15.39■□□□□ 0.05
COL4A4P53420 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
COL4A4P53420 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 TEKT4P2-202ENST00000559466 1312 ntBASIC15.39■□□□□ 0.05
COL4A4P53420 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.39■□□□□ 0.05
COL4A4P53420 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC15.39■□□□□ 0.05
COL4A4P53420 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.39■□□□□ 0.05
COL4A4P53420 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL4A4P53420 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL4A4P53420 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.38■□□□□ 0.05
COL4A4P53420 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
COL4A4P53420 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC15.38■□□□□ 0.05
COL4A4P53420 RN7SL494P-201ENST00000461517 304 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 ALG1L3P-201ENST00000503331 765 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC15.38■□□□□ 0.05
COL4A4P53420 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.38■□□□□ 0.05
COL4A4P53420 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC15.38■□□□□ 0.05
COL4A4P53420 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC15.38■□□□□ 0.05
COL4A4P53420 MIR5001-201ENST00000580185 100 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.38■□□□□ 0.05
COL4A4P53420 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
COL4A4P53420 PTPN20CP-201ENST00000614090 920 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC15.38■□□□□ 0.05
COL4A4P53420 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC15.38■□□□□ 0.05
COL4A4P53420 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
COL4A4P53420 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 AL109809.1-201ENST00000418979 1367 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
COL4A4P53420 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.38■□□□□ 0.05
COL4A4P53420 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
COL4A4P53420 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
COL4A4P53420 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
COL4A4P53420 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
COL4A4P53420 AC004522.1-201ENST00000419978 654 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC15.38■□□□□ 0.05
COL4A4P53420 CSNK1G2P1-201ENST00000442675 955 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL4A4P53420 RN7SL564P-201ENST00000496309 250 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC15.38■□□□□ 0.05
COL4A4P53420 IGHV1-12-201ENST00000518307 205 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC15.38■□□□□ 0.05
COL4A4P53420 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.38■□□□□ 0.05
COL4A4P53420 AC008972.2-201ENST00000606587 494 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 AC006483.2-201ENST00000609813 515 ntBASIC15.38■□□□□ 0.05
COL4A4P53420 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC15.38■□□□□ 0.05
COL4A4P53420 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
COL4A4P53420 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.38■□□□□ 0.05
COL4A4P53420 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.38■□□□□ 0.05
COL4A4P53420 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
COL4A4P53420 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL4A4P53420 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL4A4P53420 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL4A4P53420 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.37■□□□□ 0.05
COL4A4P53420 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL4A4P53420 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms