Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 AL627223.1-201ENST00000416693 442 ntBASIC13.23□□□□□ -0.29
MMP28Q9H239 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC13.23□□□□□ -0.29
MMP28Q9H239 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.23□□□□□ -0.29
MMP28Q9H239 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC13.23□□□□□ -0.29
MMP28Q9H239 AC243562.2-201ENST00000561247 970 ntBASIC13.23□□□□□ -0.29
MMP28Q9H239 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC13.23□□□□□ -0.29
MMP28Q9H239 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.23□□□□□ -0.29
MMP28Q9H239 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.23□□□□□ -0.29
MMP28Q9H239 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC13.23□□□□□ -0.29
MMP28Q9H239 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MMP28Q9H239 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC13.23□□□□□ -0.29
MMP28Q9H239 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
MMP28Q9H239 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.22□□□□□ -0.29
MMP28Q9H239 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.22□□□□□ -0.29
MMP28Q9H239 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.22□□□□□ -0.29
MMP28Q9H239 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC13.22□□□□□ -0.29
MMP28Q9H239 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC13.22□□□□□ -0.29
MMP28Q9H239 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC13.22□□□□□ -0.29
MMP28Q9H239 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.22□□□□□ -0.29
MMP28Q9H239 AL139400.1-201ENST00000366220 510 ntBASIC13.22□□□□□ -0.29
MMP28Q9H239 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 RPL5P21-201ENST00000404620 815 ntBASIC13.22□□□□□ -0.29
MMP28Q9H239 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.22□□□□□ -0.29
MMP28Q9H239 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 AC023141.5-201ENST00000458585 616 ntBASIC13.22□□□□□ -0.29
MMP28Q9H239 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.22□□□□□ -0.29
MMP28Q9H239 AC061975.2-201ENST00000581722 295 ntBASIC13.22□□□□□ -0.29
MMP28Q9H239 AC092364.2-202ENST00000597012 1073 ntBASIC13.22□□□□□ -0.29
MMP28Q9H239 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.22□□□□□ -0.29
MMP28Q9H239 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
MMP28Q9H239 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
MMP28Q9H239 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MMP28Q9H239 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC13.22□□□□□ -0.29
MMP28Q9H239 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
MMP28Q9H239 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC13.21□□□□□ -0.29
MMP28Q9H239 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
MMP28Q9H239 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.21□□□□□ -0.29
MMP28Q9H239 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
MMP28Q9H239 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.21□□□□□ -0.29
MMP28Q9H239 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 AL731571.1-201ENST00000617058 5428 ntBASIC13.21□□□□□ -0.29
MMP28Q9H239 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms