RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 NISCHQ9Y2I1 1504 aa26.74■■□□□ 1.87
USP49-201ENST00000373006 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
USP49-201ENST00000373006 SUPT5HO00267 1087 aaKnown RBP23.41■■□□□ 1.34
USP49-201ENST00000373006 HRCP23327 699 aa22.91■■□□□ 1.26
USP49-201ENST00000373006 DCAF8L2P0C7V8 631 aa22.89■■□□□ 1.25
USP49-201ENST00000373006 MYO15BQ96JP2 1530 aa22.82■■□□□ 1.24
USP49-201ENST00000373006 CHIC1Q5VXU3 224 aa22.81■■□□□ 1.24
USP49-201ENST00000373006 PCGF6Q9BYE7 350 aa22.76■■□□□ 1.23
USP49-201ENST00000373006 ZCCHC6Q5VYS8 1495 aaKnown RBP22.66■■□□□ 1.22
USP49-201ENST00000373006 PPARGC1BQ86YN6 1023 aaKnown RBP22.6■■□□□ 1.21
USP49-201ENST00000373006 LOC105371045A0A1W2PR82 267 aa22.34■■□□□ 1.17
USP49-201ENST00000373006 CCDC180Q9P1Z9 1646 aa22.25■■□□□ 1.15
USP49-201ENST00000373006 DCAF1Q9Y4B6 1507 aa22.13■■□□□ 1.13
USP49-201ENST00000373006 TRIM26Q12899 539 aaPredicted RBP22.02■■□□□ 1.12
USP49-201ENST00000373006 PELP1Q8IZL8 1130 aaKnown RBP21.78■■□□□ 1.08
USP49-201ENST00000373006 FAM9AQ8IZU1 332 aaPredicted RBP21.69■■□□□ 1.06
USP49-201ENST00000373006 EHMT2Q96KQ7 1210 aa21.66■■□□□ 1.06
USP49-201ENST00000373006 ZEB1P37275 1124 aaPredicted RBP21.64■■□□□ 1.06
USP49-201ENST00000373006 TRIM41Q8WV44 630 aa21.63■■□□□ 1.05
USP49-201ENST00000373006 SCAF1Q9H7N4 1312 aaKnown RBP21.53■■□□□ 1.04
USP49-201ENST00000373006 RSF1Q96T23 1441 aaPredicted RBP21.45■■□□□ 1.02
USP49-201ENST00000373006 ABCC9O60706 1549 aa21.45■■□□□ 1.02
USP49-201ENST00000373006 SCRIBQ14160 1630 aa21.3■■□□□ 1
USP49-201ENST00000373006 RB1CC1Q8TDY2 1594 aa21.29■■□□□ 1
USP49-201ENST00000373006 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.23■□□□□ 0.99
USP49-201ENST00000373006 CCER1Q8TC90 406 aaPredicted RBP21.15■□□□□ 0.98
USP49-201ENST00000373006 NEUROD1Q13562 356 aa21.09■□□□□ 0.97
USP49-201ENST00000373006 ACIN1Q9UKV3 1341 aaKnown RBP21.08■□□□□ 0.96
USP49-201ENST00000373006 TTBK1Q5TCY1 1321 aaPredicted RBP21.04■□□□□ 0.96
USP49-201ENST00000373006 CECR2Q9BXF3 1484 aa21.01■□□□□ 0.95
USP49-201ENST00000373006 DIEXFQ68CQ4 756 aaKnown RBP20.97■□□□□ 0.95
USP49-201ENST00000373006 GTF3C3Q9Y5Q9 886 aa20.95■□□□□ 0.94
USP49-201ENST00000373006 MYT1Q01538 1121 aa20.93■□□□□ 0.94
USP49-201ENST00000373006 MROH2BQ7Z745 1585 aa20.92■□□□□ 0.94
USP49-201ENST00000373006 CENPBP07199 599 aaPredicted RBP20.85■□□□□ 0.93
USP49-201ENST00000373006 WIZO95785 1651 aa20.82■□□□□ 0.92
USP49-201ENST00000373006 YTHDC1Q96MU7 727 aaKnown RBP20.71■□□□□ 0.91
USP49-201ENST00000373006 PABPN1Q86U42 306 aaKnown RBP eCLIP20.67■□□□□ 0.9
USP49-201ENST00000373006 CCDC88BA6NC98 1476 aa20.63■□□□□ 0.89
USP49-201ENST00000373006 CEP162Q5TB80 1403 aa20.63■□□□□ 0.89
USP49-201ENST00000373006 ABCC8Q09428 1581 aa20.62■□□□□ 0.89
USP49-201ENST00000373006 ZNF316A6NFI3 1004 aaPredicted RBP20.62■□□□□ 0.89
USP49-201ENST00000373006 UBTFP17480 764 aaKnown RBP20.6■□□□□ 0.89
USP49-201ENST00000373006 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.89
USP49-201ENST00000373006 NACADO15069 1562 aa20.58■□□□□ 0.89
USP49-201ENST00000373006 SOGA1O94964 1423 aa20.57■□□□□ 0.88
USP49-201ENST00000373006 BAZ1AQ9NRL2 1556 aaPredicted RBP20.56■□□□□ 0.88
USP49-201ENST00000373006 EIF4G1Q04637 1599 aaKnown RBP20.55■□□□□ 0.88
USP49-201ENST00000373006 HNRNPUL2Q1KMD3 747 aaKnown RBP20.49■□□□□ 0.87
USP49-201ENST00000373006 MIER1Q8N108 512 aa20.49■□□□□ 0.87
USP49-201ENST00000373006 CSRNP3Q8WYN3 585 aa20.49■□□□□ 0.87
USP49-201ENST00000373006 TNIKQ9UKE5 1360 aa20.49■□□□□ 0.87
USP49-201ENST00000373006 RUSC2Q8N2Y8 1516 aa20.46■□□□□ 0.87
USP49-201ENST00000373006 TOP2AP11388 1531 aaKnown RBP20.36■□□□□ 0.85
USP49-201ENST00000373006 RANGAP1P46060 587 aaPredicted RBP20.34■□□□□ 0.85
USP49-201ENST00000373006 SMARCA2P51531 1590 aa20.31■□□□□ 0.84
USP49-201ENST00000373006 GOLGA3Q08378 1498 aa20.27■□□□□ 0.83
USP49-201ENST00000373006 EEA1Q15075 1411 aa20.26■□□□□ 0.83
USP49-201ENST00000373006 SMARCA4P51532 1647 aa20.23■□□□□ 0.83
USP49-201ENST00000373006 APLP2Q06481 763 aa20.18■□□□□ 0.82
USP49-201ENST00000373006 CLIP1P30622 1438 aa20.15■□□□□ 0.82
USP49-201ENST00000373006 CEP164Q9UPV0 1460 aa20.08■□□□□ 0.81
USP49-201ENST00000373006 BCL11AQ9H165 835 aa20.08■□□□□ 0.8
USP49-201ENST00000373006 VPS8Q8N3P4 1428 aa20.05■□□□□ 0.8
USP49-201ENST00000373006 RAPGEF2Q9Y4G8 1499 aa19.99■□□□□ 0.79
USP49-201ENST00000373006 SUPT16HQ9Y5B9 1047 aaKnown RBP19.99■□□□□ 0.79
USP49-201ENST00000373006 SYNJ1O43426 1573 aa19.99■□□□□ 0.79
USP49-201ENST00000373006 KIF21BO75037 1637 aa19.95■□□□□ 0.78
USP49-201ENST00000373006 DHX57Q6P158 1386 aaKnown RBP19.93■□□□□ 0.78
USP49-201ENST00000373006 UNC13AQ9UPW8 1703 aa19.89■□□□□ 0.78
USP49-201ENST00000373006 KANK4Q5T7N3 995 aaPredicted RBP19.89■□□□□ 0.77
USP49-201ENST00000373006 BAZ1BQ9UIG0 1483 aaKnown RBP19.85■□□□□ 0.77
USP49-201ENST00000373006 CLSPNQ9HAW4 1339 aa19.84■□□□□ 0.77
USP49-201ENST00000373006 ITGAEP38570 1179 aa19.83■□□□□ 0.76
USP49-201ENST00000373006 KCNH8Q96L42 1107 aa19.81■□□□□ 0.76
USP49-201ENST00000373006 TSHZ2Q9NRE2 1034 aa19.79■□□□□ 0.76
USP49-201ENST00000373006 PRKCSHP14314 528 aaPredicted RBP19.77■□□□□ 0.76
USP49-201ENST00000373006 BCANQ96GW7 911 aa19.77■□□□□ 0.76
USP49-201ENST00000373006 BICRAQ9NZM4 1560 aa19.77■□□□□ 0.75
USP49-201ENST00000373006 ANP32EQ9BTT0 268 aa19.75■□□□□ 0.75
USP49-201ENST00000373006 ARAP1Q96P48 1450 aa19.7■□□□□ 0.74
USP49-201ENST00000373006 ATAD2BQ9ULI0 1458 aa19.69■□□□□ 0.74
USP49-201ENST00000373006 PEG3Q9GZU2 1588 aa19.68■□□□□ 0.74
USP49-201ENST00000373006 RRBP1Q9P2E9 1410 aaKnown RBP19.62■□□□□ 0.73
USP49-201ENST00000373006 CCNB3Q8WWL7 1395 aa19.62■□□□□ 0.73
USP49-201ENST00000373006 PRXQ9BXM0 1461 aa19.61■□□□□ 0.73
USP49-201ENST00000373006 DDX10Q13206 875 aaKnown RBP19.6■□□□□ 0.73
USP49-201ENST00000373006 TOP2BQ02880 1626 aa19.6■□□□□ 0.73
USP49-201ENST00000373006 FKBP8Q14318 412 aa19.6■□□□□ 0.73
USP49-201ENST00000373006 RAB3GAP2Q9H2M9 1393 aa19.55■□□□□ 0.72
USP49-201ENST00000373006 SIN3AQ96ST3 1273 aa19.54■□□□□ 0.72
USP49-201ENST00000373006 ERICH3Q5RHP9 1530 aa19.54■□□□□ 0.72
USP49-201ENST00000373006 HIRIP3Q9BW71 556 aaPredicted RBP19.54■□□□□ 0.72
USP49-201ENST00000373006 CUX2O14529 1486 aa19.5■□□□□ 0.71
USP49-201ENST00000373006 ARHGAP35Q9NRY4 1499 aa19.47■□□□□ 0.71
USP49-201ENST00000373006 TRIM52Q96A61 297 aa19.47■□□□□ 0.71
USP49-201ENST00000373006 ATP1B4Q9UN42 357 aaPredicted RBP19.47■□□□□ 0.71
USP49-201ENST00000373006 MAPKBP1O60336 1514 aa19.46■□□□□ 0.71
USP49-201ENST00000373006 KIF27Q86VH2 1401 aa19.45■□□□□ 0.7
USP49-201ENST00000373006 FAM50AQ14320 339 aaKnown RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms