Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 BX640514.1-201ENST00000583223 1918 ntBASIC11.49□□□□□ -0.57
HIST1H1AQ02539 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 HLA-DRB6-201ENST00000411500 1235 ntBASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AC092580.3-201ENST00000430932 139 ntBASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AC241585.1-201ENST00000433527 519 ntBASIC11.49□□□□□ -0.57
HIST1H1AQ02539 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 RAB35-202ENST00000534951 939 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AL844908.2-201ENST00000609461 460 ntBASIC11.49□□□□□ -0.57
HIST1H1AQ02539 5S_rRNA.22-201ENST00000614916 106 ntBASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AL390754.1-201ENST00000619088 582 ntBASIC11.49□□□□□ -0.57
HIST1H1AQ02539 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 AL645728.2-202ENST00000641679 227 ntBASIC11.49□□□□□ -0.57
HIST1H1AQ02539 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC11.49□□□□□ -0.57
HIST1H1AQ02539 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AL590560.3-201ENST00000623350 461 ntBASIC11.48□□□□□ -0.57
HIST1H1AQ02539 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms