Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DQA1P01909 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 AL009183.1-201ENST00000603760 355 ntBASIC11.25□□□□□ -0.61
HLA-DQA1P01909 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 AC120114.3-201ENST00000611923 658 ntBASIC11.25□□□□□ -0.61
HLA-DQA1P01909 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DQA1P01909 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AL365181.3-201ENST00000605886 3222 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TP73-209ENST00000603362 1668 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AL136982.4-201ENST00000437689 1740 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms