Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 AL355864.2-201ENST00000447420 863 ntBASIC13.25□□□□□ -0.29
SKA3Q8IX90 BCRP2-202ENST00000447763 634 ntBASIC13.25□□□□□ -0.29
SKA3Q8IX90 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 USP32P1-208ENST00000506594 1164 ntBASIC13.25□□□□□ -0.29
SKA3Q8IX90 AC106760.1-201ENST00000508690 800 ntBASIC13.25□□□□□ -0.29
SKA3Q8IX90 BCRP6-201ENST00000510112 632 ntBASIC13.25□□□□□ -0.29
SKA3Q8IX90 BCRP7-201ENST00000511549 544 ntBASIC13.25□□□□□ -0.29
SKA3Q8IX90 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 AL603764.1-201ENST00000636452 321 ntBASIC13.25□□□□□ -0.29
SKA3Q8IX90 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SKA3Q8IX90 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.25□□□□□ -0.29
SKA3Q8IX90 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 AC005229.1-201ENST00000392885 409 ntBASIC13.24□□□□□ -0.29
SKA3Q8IX90 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 BTNL10-201ENST00000595971 695 ntBASIC13.24□□□□□ -0.29
SKA3Q8IX90 AC233724.13-201ENST00000598383 410 ntBASIC13.24□□□□□ -0.29
SKA3Q8IX90 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 AL023775.1-201ENST00000454907 1746 ntBASIC13.24□□□□□ -0.29
SKA3Q8IX90 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.24□□□□□ -0.29
SKA3Q8IX90 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SKA3Q8IX90 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms