Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 F10-203ENST00000409306 1450 ntTSL 3 BASIC8.83□□□□□ -1
HSPG2P98160 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 GAS5-209ENST00000430245 723 ntTSL 3 BASIC8.83□□□□□ -1
HSPG2P98160 RN7SL33P-201ENST00000462543 342 ntBASIC8.83□□□□□ -1
HSPG2P98160 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 AC145285.5-201ENST00000562217 361 ntBASIC8.83□□□□□ -1
HSPG2P98160 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 PPY-202ENST00000587006 431 ntTSL 3 BASIC8.83□□□□□ -1
HSPG2P98160 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC8.83□□□□□ -1
HSPG2P98160 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC8.83□□□□□ -1
HSPG2P98160 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 CICP23-201ENST00000605013 2741 ntBASIC8.83□□□□□ -1
HSPG2P98160 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC8.83□□□□□ -1
HSPG2P98160 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 RPL18AP15-201ENST00000430258 517 ntBASIC8.83□□□□□ -1
HSPG2P98160 EEF1DP2-201ENST00000433698 843 ntBASIC8.83□□□□□ -1
HSPG2P98160 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 AC008021.1-201ENST00000474180 414 ntBASIC8.83□□□□□ -1
HSPG2P98160 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 AC093300.1-201ENST00000510368 1201 ntBASIC8.83□□□□□ -1
HSPG2P98160 NEMF-210ENST00000556672 590 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 RPS5-205ENST00000598495 800 ntTSL 3 BASIC8.83□□□□□ -1
HSPG2P98160 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC8.83□□□□□ -1
HSPG2P98160 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC8.83□□□□□ -1
HSPG2P98160 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC8.83□□□□□ -1
HSPG2P98160 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HSPG2P98160 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC8.82□□□□□ -1
HSPG2P98160 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC8.82□□□□□ -1
HSPG2P98160 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC8.82□□□□□ -1
HSPG2P98160 AC073210.1-201ENST00000414799 232 ntBASIC8.82□□□□□ -1
HSPG2P98160 CA5BP1-205ENST00000435806 1064 ntBASIC8.82□□□□□ -1
HSPG2P98160 CCND3P1-201ENST00000438347 580 ntBASIC8.82□□□□□ -1
HSPG2P98160 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC8.82□□□□□ -1
HSPG2P98160 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC8.82□□□□□ -1
HSPG2P98160 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC8.82□□□□□ -1
HSPG2P98160 PAX6-247ENST00000638965 979 ntTSL 5 BASIC8.82□□□□□ -1
HSPG2P98160 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC8.82□□□□□ -1
HSPG2P98160 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC8.82□□□□□ -1
HSPG2P98160 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC8.82□□□□□ -1
HSPG2P98160 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC8.82□□□□□ -1
HSPG2P98160 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC8.82□□□□□ -1
HSPG2P98160 AC103702.1-201ENST00000548801 2630 ntBASIC8.82□□□□□ -1
HSPG2P98160 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC8.82□□□□□ -1
HSPG2P98160 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
HSPG2P98160 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC8.82□□□□□ -1
HSPG2P98160 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC8.82□□□□□ -1
HSPG2P98160 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
HSPG2P98160 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC8.82□□□□□ -1
HSPG2P98160 AL137244.1-201ENST00000422931 865 ntBASIC8.82□□□□□ -1
HSPG2P98160 ALMS1P1-201ENST00000428767 921 ntBASIC8.82□□□□□ -1
HSPG2P98160 RN7SL87P-201ENST00000497657 288 ntBASIC8.82□□□□□ -1
HSPG2P98160 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC8.82□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms