Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAIPQ9BWF2 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 AC010141.1-201ENST00000411585 623 ntBASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 AL451050.2-201ENST00000606967 682 ntBASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 AL138725.1-201ENST00000407347 1314 ntBASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 KRT8P29-201ENST00000420409 1371 ntBASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.33■□□□□ 0.2
TRAIPQ9BWF2 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 RN7SKP230-201ENST00000365642 335 ntBASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AC016700.1-201ENST00000429424 312 ntBASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AC013726.1-201ENST00000563747 2285 ntBASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AC005730.2-201ENST00000564549 1184 ntBASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 AC008825.2-201ENST00000603374 718 ntBASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAIPQ9BWF2 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms