RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 NISCHQ9Y2I1 1504 aa35.76■■■■□ 3.31
COL9A1-204ENST00000370496 CCDC180Q9P1Z9 1646 aa31.82■■■□□ 2.68
COL9A1-204ENST00000370496 ABCC9O60706 1549 aa30.89■■■□□ 2.53
COL9A1-204ENST00000370496 ZCCHC6Q5VYS8 1495 aaKnown RBP29.87■■■□□ 2.37
COL9A1-204ENST00000370496 RB1CC1Q8TDY2 1594 aa29.83■■■□□ 2.37
COL9A1-204ENST00000370496 NACADO15069 1562 aa29.81■■■□□ 2.36
COL9A1-204ENST00000370496 DCAF8L2P0C7V8 631 aa29.75■■■□□ 2.35
COL9A1-204ENST00000370496 MYO15BQ96JP2 1530 aa29.65■■■□□ 2.34
COL9A1-204ENST00000370496 DCAF1Q9Y4B6 1507 aa29.6■■■□□ 2.33
COL9A1-204ENST00000370496 UNC13AQ9UPW8 1703 aa29.2■■■□□ 2.26
COL9A1-204ENST00000370496 SCRIBQ14160 1630 aa29.05■■■□□ 2.24
COL9A1-204ENST00000370496 BICRAQ9NZM4 1560 aa28.87■■■□□ 2.21
COL9A1-204ENST00000370496 PABPN1Q86U42 306 aaKnown RBP eCLIP28.8■■■□□ 2.2
COL9A1-204ENST00000370496 SHROOM4Q9ULL8 1493 aa28.62■■■□□ 2.17
COL9A1-204ENST00000370496 EIF4G1Q04637 1599 aaKnown RBP28.13■■■□□ 2.09
COL9A1-204ENST00000370496 DNAJC5BQ9UF47 199 aa28.01■■■□□ 2.07
COL9A1-204ENST00000370496 CC2D2AQ9P2K1 1620 aa27.97■■■□□ 2.07
COL9A1-204ENST00000370496 CECR2Q9BXF3 1484 aa27.81■■■□□ 2.04
COL9A1-204ENST00000370496 SMARCA4P51532 1647 aa27.77■■■□□ 2.04
COL9A1-204ENST00000370496 BAZ1AQ9NRL2 1556 aaPredicted RBP27.75■■■□□ 2.03
COL9A1-204ENST00000370496 MROH2BQ7Z745 1585 aa27.56■■■□□ 2
COL9A1-204ENST00000370496 SMARCA2P51531 1590 aa27.54■■■□□ 2
COL9A1-204ENST00000370496 ATAD2BQ9ULI0 1458 aa27.5■■□□□ 1.99
COL9A1-204ENST00000370496 PEG3Q9GZU2 1588 aa27.46■■□□□ 1.99
COL9A1-204ENST00000370496 NCAPD3P42695 1498 aa27.43■■□□□ 1.98
COL9A1-204ENST00000370496 HMGXB3Q12766 1538 aa27.41■■□□□ 1.98
COL9A1-204ENST00000370496 BAZ1BQ9UIG0 1483 aaKnown RBP27.35■■□□□ 1.97
COL9A1-204ENST00000370496 WIZO95785 1651 aa27.32■■□□□ 1.96
COL9A1-204ENST00000370496 RSF1Q96T23 1441 aaPredicted RBP27.27■■□□□ 1.96
COL9A1-204ENST00000370496 TOP2AP11388 1531 aaKnown RBP27.06■■□□□ 1.92
COL9A1-204ENST00000370496 LAMC3Q9Y6N6 1575 aa26.77■■□□□ 1.88
COL9A1-204ENST00000370496 NESP48681 1621 aa26.76■■□□□ 1.87
COL9A1-204ENST00000370496 SUPT5HO00267 1087 aaKnown RBP26.71■■□□□ 1.87
COL9A1-204ENST00000370496 ERCC6Q03468 1493 aa26.66■■□□□ 1.86
COL9A1-204ENST00000370496 CCDC88BA6NC98 1476 aa26.65■■□□□ 1.86
COL9A1-204ENST00000370496 CADPSQ9ULU8 1353 aa26.64■■□□□ 1.85
COL9A1-204ENST00000370496 KIF21AQ7Z4S6 1674 aa26.55■■□□□ 1.84
COL9A1-204ENST00000370496 CFTRP13569 1480 aa26.55■■□□□ 1.84
COL9A1-204ENST00000370496 PRDM2Q13029 1718 aa26.54■■□□□ 1.84
COL9A1-204ENST00000370496 PDS5BQ9NTI5 1447 aa26.53■■□□□ 1.84
COL9A1-204ENST00000370496 THOC2Q8NI27 1593 aaKnown RBP26.4■■□□□ 1.82
COL9A1-204ENST00000370496 FANCD2Q9BXW9 1451 aa26.39■■□□□ 1.82
COL9A1-204ENST00000370496 CEP164Q9UPV0 1460 aa26.39■■□□□ 1.81
COL9A1-204ENST00000370496 MRC2Q9UBG0 1479 aa26.3■■□□□ 1.8
COL9A1-204ENST00000370496 CUX2O14529 1486 aa26.27■■□□□ 1.8
COL9A1-204ENST00000370496 WDR62O43379 1518 aa26.21■■□□□ 1.79
COL9A1-204ENST00000370496 AEBP2Q6ZN18 517 aaPredicted RBP26.11■■□□□ 1.77
COL9A1-204ENST00000370496 URB2Q14146 1524 aaKnown RBP26.11■■□□□ 1.77
COL9A1-204ENST00000370496 DNMBPQ6XZF7 1577 aa26.03■■□□□ 1.76
COL9A1-204ENST00000370496 TOPBP1Q92547 1522 aa25.99■■□□□ 1.75
COL9A1-204ENST00000370496 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
COL9A1-204ENST00000370496 CUX1P39880 1505 aa25.87■■□□□ 1.73
COL9A1-204ENST00000370496 POLA1P09884 1462 aaPredicted RBP25.79■■□□□ 1.72
COL9A1-204ENST00000370496 IFT140Q96RY7 1462 aa25.79■■□□□ 1.72
COL9A1-204ENST00000370496 FGD5Q6ZNL6 1462 aa25.76■■□□□ 1.71
COL9A1-204ENST00000370496 WRNQ14191 1432 aaPredicted RBP eCLIP25.76■■□□□ 1.71
COL9A1-204ENST00000370496 BIVM-ERCC5R4GMW8 1640 aa25.74■■□□□ 1.71
COL9A1-204ENST00000370496 SYNJ1O43426 1573 aa25.73■■□□□ 1.71
COL9A1-204ENST00000370496 TOP2BQ02880 1626 aa25.72■■□□□ 1.71
COL9A1-204ENST00000370496 TARBP1Q13395 1621 aaKnown RBP25.71■■□□□ 1.71
COL9A1-204ENST00000370496 EIF4G3O43432 1585 aaKnown RBP25.65■■□□□ 1.7
COL9A1-204ENST00000370496 RAD54L2Q9Y4B4 1467 aa25.64■■□□□ 1.7
COL9A1-204ENST00000370496 ZNF608Q9ULD9 1512 aaPredicted RBP25.64■■□□□ 1.69
COL9A1-204ENST00000370496 SOGA1O94964 1423 aa25.64■■□□□ 1.69
COL9A1-204ENST00000370496 WDR97A6NE52 1622 aa25.62■■□□□ 1.69
COL9A1-204ENST00000370496 ABCA10Q8WWZ4 1543 aa25.5■■□□□ 1.67
COL9A1-204ENST00000370496 AQRO60306 1485 aaKnown RBP eCLIP25.49■■□□□ 1.67
COL9A1-204ENST00000370496 TDRD9Q8NDG6 1382 aaKnown RBP25.46■■□□□ 1.67
COL9A1-204ENST00000370496 ABCA5Q8WWZ7 1642 aa25.45■■□□□ 1.66
COL9A1-204ENST00000370496 PBRM1Q86U86 1689 aa25.44■■□□□ 1.66
COL9A1-204ENST00000370496 GAPVD1Q14C86 1478 aa25.38■■□□□ 1.65
COL9A1-204ENST00000370496 GRIN2BQ13224 1484 aa25.36■■□□□ 1.65
COL9A1-204ENST00000370496 SNAPC4Q5SXM2 1469 aa25.33■■□□□ 1.65
COL9A1-204ENST00000370496 CHD1O14646 1710 aa25.3■■□□□ 1.64
COL9A1-204ENST00000370496 MAGI1Q96QZ7 1491 aaPredicted RBP25.29■■□□□ 1.64
COL9A1-204ENST00000370496 ERICH3Q5RHP9 1530 aa25.22■■□□□ 1.63
COL9A1-204ENST00000370496 TRIM41Q8WV44 630 aa25.21■■□□□ 1.63
COL9A1-204ENST00000370496 ADAMTS12P58397 1594 aa25.21■■□□□ 1.63
COL9A1-204ENST00000370496 KIF27Q86VH2 1401 aa25.21■■□□□ 1.63
COL9A1-204ENST00000370496 SYNJ2O15056 1496 aa25.18■■□□□ 1.62
COL9A1-204ENST00000370496 FBLN2P98095 1184 aa25.16■■□□□ 1.62
COL9A1-204ENST00000370496 DNAJC5Q9H3Z4 198 aa25.12■■□□□ 1.61
COL9A1-204ENST00000370496 OSCARQ8IYS5 282 aa25.1■■□□□ 1.61
COL9A1-204ENST00000370496 CUL7Q14999 1698 aa25.1■■□□□ 1.61
COL9A1-204ENST00000370496 CHMP7Q8WUX9 453 aaPredicted RBP25.09■■□□□ 1.61
COL9A1-204ENST00000370496 FHAD1B1AJZ9 1412 aa25.08■■□□□ 1.61
COL9A1-204ENST00000370496 GRIN2AQ12879 1464 aa25.05■■□□□ 1.6
COL9A1-204ENST00000370496 IGF1RP08069 1367 aa24.99■■□□□ 1.59
COL9A1-204ENST00000370496 RUSC2Q8N2Y8 1516 aa24.98■■□□□ 1.59
COL9A1-204ENST00000370496 CHIC1Q5VXU3 224 aa24.97■■□□□ 1.59
COL9A1-204ENST00000370496 CLASP1Q7Z460 1538 aa24.96■■□□□ 1.59
COL9A1-204ENST00000370496 CEP170Q5SW79 1584 aa24.94■■□□□ 1.58
COL9A1-204ENST00000370496 NUP160Q12769 1436 aa24.9■■□□□ 1.58
COL9A1-204ENST00000370496 CARMIL1Q5VZK9 1371 aa24.88■■□□□ 1.57
COL9A1-204ENST00000370496 EEA1Q15075 1411 aa24.84■■□□□ 1.57
COL9A1-204ENST00000370496 RIMBP3CA6NJZ7 1639 aa24.82■■□□□ 1.56
COL9A1-204ENST00000370496 RIMBP3BA6NNM3 1639 aa24.82■■□□□ 1.56
COL9A1-204ENST00000370496 RIMBP3Q9UFD9 1639 aa24.82■■□□□ 1.56
COL9A1-204ENST00000370496 ARHGEF11O15085 1522 aa24.82■■□□□ 1.56
COL9A1-204ENST00000370496 RAPGEF2Q9Y4G8 1499 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms