Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.14■□□□□ 0.97
DEPDC4Q8N2C3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 DUX4L18-201ENST00000553347 1267 ntBASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.13■□□□□ 0.97
DEPDC4Q8N2C3 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 BHLHE23-202ENST00000612929 1109 ntBASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.12■□□□□ 0.97
DEPDC4Q8N2C3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
DEPDC4Q8N2C3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DEPDC4Q8N2C3 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 MIR6765-201ENST00000614092 87 ntBASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.09■□□□□ 0.97
DEPDC4Q8N2C3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
DEPDC4Q8N2C3 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
DEPDC4Q8N2C3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
DEPDC4Q8N2C3 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DEPDC4Q8N2C3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DEPDC4Q8N2C3 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
DEPDC4Q8N2C3 DUX4L9-201ENST00000449051 1259 ntBASIC21.08■□□□□ 0.97
DEPDC4Q8N2C3 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
DEPDC4Q8N2C3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
DEPDC4Q8N2C3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.08■□□□□ 0.96
DEPDC4Q8N2C3 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
DEPDC4Q8N2C3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 AC139795.1-202ENST00000500444 432 ntBASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DEPDC4Q8N2C3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 AC074183.2-201ENST00000623112 922 ntBASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 AC233723.2-201ENST00000623798 2106 ntBASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms