Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
SMIM28A0A1B0GU29 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.75■■□□□ 1.55
SMIM28A0A1B0GU29 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.75■■□□□ 1.55
SMIM28A0A1B0GU29 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SMIM28A0A1B0GU29 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SMIM28A0A1B0GU29 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SMIM28A0A1B0GU29 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SMIM28A0A1B0GU29 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.72■■□□□ 1.55
SMIM28A0A1B0GU29 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
SMIM28A0A1B0GU29 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC24.72■■□□□ 1.55
SMIM28A0A1B0GU29 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SMIM28A0A1B0GU29 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SMIM28A0A1B0GU29 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SMIM28A0A1B0GU29 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.71■■□□□ 1.55
SMIM28A0A1B0GU29 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.71■■□□□ 1.55
SMIM28A0A1B0GU29 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
SMIM28A0A1B0GU29 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
SMIM28A0A1B0GU29 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
SMIM28A0A1B0GU29 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.55
SMIM28A0A1B0GU29 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
SMIM28A0A1B0GU29 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
SMIM28A0A1B0GU29 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.7■■□□□ 1.54
SMIM28A0A1B0GU29 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.7■■□□□ 1.54
SMIM28A0A1B0GU29 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.7■■□□□ 1.54
SMIM28A0A1B0GU29 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
SMIM28A0A1B0GU29 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.7■■□□□ 1.54
SMIM28A0A1B0GU29 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SMIM28A0A1B0GU29 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SMIM28A0A1B0GU29 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.69■■□□□ 1.54
SMIM28A0A1B0GU29 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SMIM28A0A1B0GU29 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
SMIM28A0A1B0GU29 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
SMIM28A0A1B0GU29 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
SMIM28A0A1B0GU29 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC24.69■■□□□ 1.54
SMIM28A0A1B0GU29 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SMIM28A0A1B0GU29 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SMIM28A0A1B0GU29 AL139246.5-201ENST00000606645 996 ntBASIC24.68■■□□□ 1.54
SMIM28A0A1B0GU29 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
SMIM28A0A1B0GU29 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
SMIM28A0A1B0GU29 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
SMIM28A0A1B0GU29 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
SMIM28A0A1B0GU29 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
SMIM28A0A1B0GU29 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC24.67■■□□□ 1.54
SMIM28A0A1B0GU29 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
SMIM28A0A1B0GU29 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
SMIM28A0A1B0GU29 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC24.67■■□□□ 1.54
SMIM28A0A1B0GU29 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 AC096631.2-201ENST00000436136 790 ntBASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 AC110285.6-201ENST00000617652 491 ntBASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC24.66■■□□□ 1.54
SMIM28A0A1B0GU29 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 GATM-206ENST00000558336 1522 ntTSL 2 BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SMIM28A0A1B0GU29 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
SMIM28A0A1B0GU29 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
SMIM28A0A1B0GU29 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.64■■□□□ 1.54
SMIM28A0A1B0GU29 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC24.64■■□□□ 1.54
SMIM28A0A1B0GU29 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24.64■■□□□ 1.54
SMIM28A0A1B0GU29 SRD5A1P1-201ENST00000442297 786 ntBASIC24.64■■□□□ 1.54
SMIM28A0A1B0GU29 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
SMIM28A0A1B0GU29 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
SMIM28A0A1B0GU29 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SMIM28A0A1B0GU29 ALDH1A3-203ENST00000557963 1670 ntBASIC24.63■■□□□ 1.53
SMIM28A0A1B0GU29 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SMIM28A0A1B0GU29 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SMIM28A0A1B0GU29 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
SMIM28A0A1B0GU29 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.63■■□□□ 1.53
SMIM28A0A1B0GU29 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.63■■□□□ 1.53
SMIM28A0A1B0GU29 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SMIM28A0A1B0GU29 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SMIM28A0A1B0GU29 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms