Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ZBED1P1-201ENST00000502364 1930 ntBASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 SCARNA20.5-201ENST00000516991 142 ntBASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 MIR4783-201ENST00000580343 82 ntBASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 AC009955.4-201ENST00000597192 544 ntBASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 AC244452.3-201ENST00000636814 210 ntBASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLCF1Q9UBD9 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 ACE3P-201ENST00000423435 1973 ntBASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
CLCF1Q9UBD9 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 SERPINA13P-202ENST00000478994 924 ntBASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 AC131206.1-201ENST00000538078 1211 ntBASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.27□□□□□ -0.29
CLCF1Q9UBD9 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms