RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 NISCHQ9Y2I1 1504 aa26.54■■□□□ 1.84
NPHP4-201ENST00000378156 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
NPHP4-201ENST00000378156 SUPT5HO00267 1087 aaKnown RBP25.21■■□□□ 1.63
NPHP4-201ENST00000378156 SHROOM4Q9ULL8 1493 aa25.03■■□□□ 1.6
NPHP4-201ENST00000378156 EHMT2Q96KQ7 1210 aa24.04■■□□□ 1.44
NPHP4-201ENST00000378156 PCGF6Q9BYE7 350 aa23.71■■□□□ 1.39
NPHP4-201ENST00000378156 PELP1Q8IZL8 1130 aaKnown RBP23.66■■□□□ 1.38
NPHP4-201ENST00000378156 FAM9AQ8IZU1 332 aaPredicted RBP23.65■■□□□ 1.38
NPHP4-201ENST00000378156 APLP2Q06481 763 aa23.56■■□□□ 1.36
NPHP4-201ENST00000378156 TRIM41Q8WV44 630 aa23.33■■□□□ 1.33
NPHP4-201ENST00000378156 TTBK1Q5TCY1 1321 aaPredicted RBP23.24■■□□□ 1.31
NPHP4-201ENST00000378156 RANGAP1P46060 587 aaPredicted RBP23.08■■□□□ 1.28
NPHP4-201ENST00000378156 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
NPHP4-201ENST00000378156 UBTFP17480 764 aaKnown RBP22.96■■□□□ 1.27
NPHP4-201ENST00000378156 ZEB1P37275 1124 aaPredicted RBP22.93■■□□□ 1.26
NPHP4-201ENST00000378156 LOC105371045A0A1W2PR82 267 aa22.9■■□□□ 1.26
NPHP4-201ENST00000378156 CCER1Q8TC90 406 aaPredicted RBP22.86■■□□□ 1.25
NPHP4-201ENST00000378156 HRCP23327 699 aa22.83■■□□□ 1.25
NPHP4-201ENST00000378156 ATP1B4Q9UN42 357 aaPredicted RBP22.83■■□□□ 1.24
NPHP4-201ENST00000378156 MYT1Q01538 1121 aa22.81■■□□□ 1.24
NPHP4-201ENST00000378156 PPARGC1BQ86YN6 1023 aaKnown RBP22.8■■□□□ 1.24
NPHP4-201ENST00000378156 TRIM26Q12899 539 aaPredicted RBP22.76■■□□□ 1.23
NPHP4-201ENST00000378156 CENPBP07199 599 aaPredicted RBP22.75■■□□□ 1.23
NPHP4-201ENST00000378156 ERICH6Q7L0X2 663 aa22.53■■□□□ 1.2
NPHP4-201ENST00000378156 ABCC9O60706 1549 aa22.51■■□□□ 1.19
NPHP4-201ENST00000378156 PABPN1Q86U42 306 aaKnown RBP eCLIP22.32■■□□□ 1.16
NPHP4-201ENST00000378156 YTHDC1Q96MU7 727 aaKnown RBP22.29■■□□□ 1.16
NPHP4-201ENST00000378156 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.12■■□□□ 1.13
NPHP4-201ENST00000378156 ZCCHC6Q5VYS8 1495 aaKnown RBP22.12■■□□□ 1.13
NPHP4-201ENST00000378156 HNRNPUL2Q1KMD3 747 aaKnown RBP22.11■■□□□ 1.13
NPHP4-201ENST00000378156 ITGAEP38570 1179 aa22.1■■□□□ 1.13
NPHP4-201ENST00000378156 NEFLP07196 543 aa22.08■■□□□ 1.12
NPHP4-201ENST00000378156 MYT1LQ9UL68 1186 aa21.87■■□□□ 1.09
NPHP4-201ENST00000378156 DIEXFQ68CQ4 756 aaKnown RBP21.83■■□□□ 1.09
NPHP4-201ENST00000378156 SCRIBQ14160 1630 aa21.7■■□□□ 1.06
NPHP4-201ENST00000378156 CCDC180Q9P1Z9 1646 aa21.69■■□□□ 1.06
NPHP4-201ENST00000378156 MYO15BQ96JP2 1530 aa21.65■■□□□ 1.06
NPHP4-201ENST00000378156 POLR3GLQ9BT43 218 aa21.64■■□□□ 1.06
NPHP4-201ENST00000378156 DCAF1Q9Y4B6 1507 aa21.63■■□□□ 1.05
NPHP4-201ENST00000378156 FAM50AQ14320 339 aaKnown RBP21.62■■□□□ 1.05
NPHP4-201ENST00000378156 CSRNP3Q8WYN3 585 aa21.58■■□□□ 1.05
NPHP4-201ENST00000378156 FBLN2P98095 1184 aa21.48■■□□□ 1.03
NPHP4-201ENST00000378156 DAXXQ9UER7 740 aaPredicted RBP21.43■■□□□ 1.02
NPHP4-201ENST00000378156 GTF3C3Q9Y5Q9 886 aa21.43■■□□□ 1.02
NPHP4-201ENST00000378156 TRIM52Q96A61 297 aa21.43■■□□□ 1.02
NPHP4-201ENST00000378156 CNGB1Q14028 1251 aaPredicted RBP21.42■■□□□ 1.02
NPHP4-201ENST00000378156 ZNF316A6NFI3 1004 aaPredicted RBP21.4■■□□□ 1.02
NPHP4-201ENST00000378156 NEUROD1Q13562 356 aa21.35■■□□□ 1.01
NPHP4-201ENST00000378156 RSF1Q96T23 1441 aaPredicted RBP21.34■■□□□ 1.01
NPHP4-201ENST00000378156 P3H3Q8IVL6 736 aa21.34■■□□□ 1.01
NPHP4-201ENST00000378156 ACIN1Q9UKV3 1341 aaKnown RBP21.27■■□□□ 1
NPHP4-201ENST00000378156 SLC4A1APQ9BWU0 796 aaKnown RBP21.21■□□□□ 0.99
NPHP4-201ENST00000378156 ARID3CA6NKF2 412 aa21.19■□□□□ 0.98
NPHP4-201ENST00000378156 RTL5Q5HYW3 569 aaPredicted RBP21.16■□□□□ 0.98
NPHP4-201ENST00000378156 ZNF326Q5BKZ1 582 aaKnown RBP21.1■□□□□ 0.97
NPHP4-201ENST00000378156 RB1CC1Q8TDY2 1594 aa21.1■□□□□ 0.97
NPHP4-201ENST00000378156 BCANQ96GW7 911 aa21.09■□□□□ 0.97
NPHP4-201ENST00000378156 CDK11AQ9UQ88 783 aaPredicted RBP21.08■□□□□ 0.96
NPHP4-201ENST00000378156 ANP32CO43423 234 aa21.02■□□□□ 0.96
NPHP4-201ENST00000378156 ZNF777Q9ULD5 760 aaPredicted RBP21.01■□□□□ 0.95
NPHP4-201ENST00000378156 NACADO15069 1562 aa20.96■□□□□ 0.95
NPHP4-201ENST00000378156 CEP162Q5TB80 1403 aa20.93■□□□□ 0.94
NPHP4-201ENST00000378156 CECR2Q9BXF3 1484 aa20.93■□□□□ 0.94
NPHP4-201ENST00000378156 CLIP1P30622 1438 aa20.91■□□□□ 0.94
NPHP4-201ENST00000378156 SCAF1Q9H7N4 1312 aaKnown RBP20.91■□□□□ 0.94
NPHP4-201ENST00000378156 EEA1Q15075 1411 aa20.81■□□□□ 0.92
NPHP4-201ENST00000378156 MIER1Q8N108 512 aa20.8■□□□□ 0.92
NPHP4-201ENST00000378156 GOLGA3Q08378 1498 aa20.8■□□□□ 0.92
NPHP4-201ENST00000378156 WRNQ14191 1432 aaPredicted RBP eCLIP20.79■□□□□ 0.92
NPHP4-201ENST00000378156 DDX10Q13206 875 aaKnown RBP20.77■□□□□ 0.91
NPHP4-201ENST00000378156 TNIKQ9UKE5 1360 aa20.77■□□□□ 0.91
NPHP4-201ENST00000378156 CLSPNQ9HAW4 1339 aa20.75■□□□□ 0.91
NPHP4-201ENST00000378156 CHMP7Q8WUX9 453 aaPredicted RBP20.73■□□□□ 0.91
NPHP4-201ENST00000378156 BAZ1BQ9UIG0 1483 aaKnown RBP20.73■□□□□ 0.91
NPHP4-201ENST00000378156 NPM1P06748 294 aaKnown RBP eCLIP20.73■□□□□ 0.91
NPHP4-201ENST00000378156 TONSLQ96HA7 1378 aa20.71■□□□□ 0.91
NPHP4-201ENST00000378156 BAZ1AQ9NRL2 1556 aaPredicted RBP20.69■□□□□ 0.9
NPHP4-201ENST00000378156 CHIC2Q9UKJ5 165 aa20.69■□□□□ 0.9
NPHP4-201ENST00000378156 MTUS2Q5JR59 1369 aa20.68■□□□□ 0.9
NPHP4-201ENST00000378156 MROH2BQ7Z745 1585 aa20.67■□□□□ 0.9
NPHP4-201ENST00000378156 SOGA1O94964 1423 aa20.65■□□□□ 0.9
NPHP4-201ENST00000378156 FKBP8Q14318 412 aa20.64■□□□□ 0.89
NPHP4-201ENST00000378156 CEP164Q9UPV0 1460 aa20.61■□□□□ 0.89
NPHP4-201ENST00000378156 TSPY4P0CV99 314 aa20.61■□□□□ 0.89
NPHP4-201ENST00000378156 TSPY10P0CW01 314 aa20.61■□□□□ 0.89
NPHP4-201ENST00000378156 HIRIP3Q9BW71 556 aaPredicted RBP20.59■□□□□ 0.89
NPHP4-201ENST00000378156 ESF1Q9H501 851 aaKnown RBP20.59■□□□□ 0.89
NPHP4-201ENST00000378156 CHGAP10645 457 aaKnown RBP20.57■□□□□ 0.88
NPHP4-201ENST00000378156 KIF27Q86VH2 1401 aa20.55■□□□□ 0.88
NPHP4-201ENST00000378156 HNRNPUQ00839 825 aaKnown RBP eCLIP20.54■□□□□ 0.88
NPHP4-201ENST00000378156 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.53■□□□□ 0.88
NPHP4-201ENST00000378156 NEFMP07197 916 aa20.52■□□□□ 0.88
NPHP4-201ENST00000378156 ABCC8Q09428 1581 aa20.5■□□□□ 0.87
NPHP4-201ENST00000378156 CCDC88BA6NC98 1476 aa20.49■□□□□ 0.87
NPHP4-201ENST00000378156 STAG3Q9UJ98 1225 aa20.49■□□□□ 0.87
NPHP4-201ENST00000378156 FAM9BQ8IZU0 186 aa20.46■□□□□ 0.87
NPHP4-201ENST00000378156 CANXP27824 592 aaKnown RBP20.45■□□□□ 0.86
NPHP4-201ENST00000378156 PLEKHD1A6NEE1 506 aa20.43■□□□□ 0.86
NPHP4-201ENST00000378156 ZBTB47Q9UFB7 747 aaPredicted RBP20.43■□□□□ 0.86
NPHP4-201ENST00000378156 RRP7BPQ9NSQ0 103 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms