Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 SPTLC1P1-201ENST00000447199 261 ntBASIC17.06■□□□□ 0.32
ATL3Q6DD88 KRT18P25-201ENST00000508931 1278 ntBASIC17.06■□□□□ 0.32
ATL3Q6DD88 AC093214.1-201ENST00000511688 1107 ntBASIC17.06■□□□□ 0.32
ATL3Q6DD88 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 RNA5SP421-201ENST00000516864 134 ntBASIC17.06■□□□□ 0.32
ATL3Q6DD88 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 AP001063.1-201ENST00000568332 529 ntBASIC17.06■□□□□ 0.32
ATL3Q6DD88 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 AC005252.2-201ENST00000624630 1141 ntBASIC17.06■□□□□ 0.32
ATL3Q6DD88 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATL3Q6DD88 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATL3Q6DD88 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATL3Q6DD88 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATL3Q6DD88 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ATL3Q6DD88 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATL3Q6DD88 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ATL3Q6DD88 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ATL3Q6DD88 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ATL3Q6DD88 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 AC123567.1-201ENST00000548294 1261 ntBASIC17.05■□□□□ 0.32
ATL3Q6DD88 AC103988.2-201ENST00000561804 725 ntBASIC17.05■□□□□ 0.32
ATL3Q6DD88 AC005498.2-205ENST00000593218 784 ntBASIC17.05■□□□□ 0.32
ATL3Q6DD88 BX088702.1-201ENST00000610784 235 ntBASIC17.05■□□□□ 0.32
ATL3Q6DD88 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 AP001002.3-201ENST00000623482 206 ntBASIC17.05■□□□□ 0.32
ATL3Q6DD88 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATL3Q6DD88 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.05■□□□□ 0.32
ATL3Q6DD88 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 AC087499.6-201ENST00000411576 835 ntBASIC17.04■□□□□ 0.32
ATL3Q6DD88 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 AC022137.2-201ENST00000503482 481 ntBASIC17.04■□□□□ 0.32
ATL3Q6DD88 ALG3P1-201ENST00000508806 1114 ntBASIC17.04■□□□□ 0.32
ATL3Q6DD88 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.04■□□□□ 0.32
ATL3Q6DD88 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms