Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.75□□□□□ -0.37
USF1P22415 CNN2P10-201ENST00000443067 918 ntBASIC12.75□□□□□ -0.37
USF1P22415 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC12.75□□□□□ -0.37
USF1P22415 IGHJ2P-201ENST00000454480 60 ntBASIC12.75□□□□□ -0.37
USF1P22415 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 PARP8-218ENST00000513738 596 ntTSL 4 BASIC12.75□□□□□ -0.37
USF1P22415 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC12.75□□□□□ -0.37
USF1P22415 AL109954.1-202ENST00000564051 2148 ntBASIC12.75□□□□□ -0.37
USF1P22415 ARL16-210ENST00000574938 751 ntTSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.75□□□□□ -0.37
USF1P22415 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 AC148477.4-201ENST00000613430 1793 ntBASIC12.75□□□□□ -0.37
USF1P22415 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC12.75□□□□□ -0.37
USF1P22415 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
USF1P22415 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
USF1P22415 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.75□□□□□ -0.37
USF1P22415 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.74□□□□□ -0.37
USF1P22415 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
USF1P22415 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
USF1P22415 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 SNX21-203ENST00000372541 771 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 AC079178.1-201ENST00000420915 656 ntBASIC12.74□□□□□ -0.37
USF1P22415 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC12.74□□□□□ -0.37
USF1P22415 FAM8A4P-201ENST00000435433 1213 ntBASIC12.74□□□□□ -0.37
USF1P22415 POM121L10P-201ENST00000436994 1285 ntBASIC12.74□□□□□ -0.37
USF1P22415 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC12.74□□□□□ -0.37
USF1P22415 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC12.74□□□□□ -0.37
USF1P22415 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
USF1P22415 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC12.74□□□□□ -0.37
USF1P22415 AL096828.3-201ENST00000615354 462 ntBASIC12.74□□□□□ -0.37
USF1P22415 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
USF1P22415 AC006486.2-201ENST00000624246 2199 ntBASIC12.74□□□□□ -0.37
USF1P22415 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.74□□□□□ -0.37
USF1P22415 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC12.74□□□□□ -0.37
USF1P22415 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
USF1P22415 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
USF1P22415 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.73□□□□□ -0.37
USF1P22415 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms