Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
COL6A3P12111 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL6A3P12111 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC15.01□□□□□ -0.01
COL6A3P12111 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC15.01□□□□□ -0.01
COL6A3P12111 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL6A3P12111 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC15.01□□□□□ -0.01
COL6A3P12111 AC148476.1-201ENST00000622182 705 ntBASIC15.01□□□□□ -0.01
COL6A3P12111 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
COL6A3P12111 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
COL6A3P12111 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.01□□□□□ -0.01
COL6A3P12111 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.01□□□□□ -0.01
COL6A3P12111 OR7E115P-201ENST00000382617 1024 ntBASIC15.01□□□□□ -0.01
COL6A3P12111 RPSAP12-201ENST00000435879 888 ntBASIC15.01□□□□□ -0.01
COL6A3P12111 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC15.01□□□□□ -0.01
COL6A3P12111 AC104117.4-201ENST00000521486 847 ntBASIC15.01□□□□□ -0.01
COL6A3P12111 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC15.01□□□□□ -0.01
COL6A3P12111 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL6A3P12111 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A3P12111 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15□□□□□ -0.01
COL6A3P12111 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15□□□□□ -0.01
COL6A3P12111 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC15□□□□□ -0.01
COL6A3P12111 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
COL6A3P12111 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15□□□□□ -0.01
COL6A3P12111 PCDHGB8P-201ENST00000502926 1973 ntBASIC15□□□□□ -0.01
COL6A3P12111 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15□□□□□ -0.01
COL6A3P12111 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15□□□□□ -0.01
COL6A3P12111 LINC01664-202ENST00000441544 1175 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 FAM153C-208ENST00000511189 926 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
COL6A3P12111 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL6A3P12111 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15□□□□□ -0.01
COL6A3P12111 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL6A3P12111 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
COL6A3P12111 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A3P12111 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.99□□□□□ -0.01
COL6A3P12111 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 ARL17B-207ENST00000575960 731 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
COL6A3P12111 AC124944.3-201ENST00000607976 1304 ntBASIC14.99□□□□□ -0.01
COL6A3P12111 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.99□□□□□ -0.01
COL6A3P12111 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 YY1P2-201ENST00000438766 948 ntBASIC14.99□□□□□ -0.01
COL6A3P12111 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.99□□□□□ -0.01
COL6A3P12111 RPS5-205ENST00000598495 800 ntTSL 3 BASIC14.99□□□□□ -0.01
COL6A3P12111 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.99□□□□□ -0.01
COL6A3P12111 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.99□□□□□ -0.01
COL6A3P12111 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.99□□□□□ -0.01
COL6A3P12111 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.99□□□□□ -0.01
COL6A3P12111 KRT18P33-201ENST00000398525 1043 ntBASIC14.99□□□□□ -0.01
COL6A3P12111 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.99□□□□□ -0.01
COL6A3P12111 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC14.99□□□□□ -0.01
COL6A3P12111 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 AC117503.4-201ENST00000623229 1418 ntBASIC14.99□□□□□ -0.01
COL6A3P12111 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.99□□□□□ -0.01
COL6A3P12111 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms