Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 AC004449.1-201ENST00000564240 433 ntBASIC14.37□□□□□ -0.11
PDLIM1O00151 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
PDLIM1O00151 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
PDLIM1O00151 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 AC138969.3-201ENST00000546612 1459 ntBASIC14.37□□□□□ -0.11
PDLIM1O00151 AC138932.2-201ENST00000548268 1459 ntBASIC14.37□□□□□ -0.11
PDLIM1O00151 AC126755.4-201ENST00000549796 1459 ntBASIC14.37□□□□□ -0.11
PDLIM1O00151 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM1O00151 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM1O00151 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
PDLIM1O00151 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
PDLIM1O00151 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PDLIM1O00151 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PDLIM1O00151 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM1O00151 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM1O00151 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM1O00151 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM1O00151 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM1O00151 AC136604.1-201ENST00000418535 575 ntBASIC14.36□□□□□ -0.11
PDLIM1O00151 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM1O00151 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM1O00151 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.36□□□□□ -0.11
PDLIM1O00151 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.36□□□□□ -0.11
PDLIM1O00151 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.36□□□□□ -0.11
PDLIM1O00151 Z92544.3-201ENST00000624747 417 ntBASIC14.36□□□□□ -0.11
PDLIM1O00151 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 AC019294.4-201ENST00000561777 2905 ntBASIC14.36□□□□□ -0.11
PDLIM1O00151 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM1O00151 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM1O00151 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM1O00151 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PDLIM1O00151 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM1O00151 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PDLIM1O00151 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM1O00151 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.35□□□□□ -0.11
PDLIM1O00151 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
PDLIM1O00151 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
PDLIM1O00151 SPDYE7P-202ENST00000420373 878 ntBASIC14.35□□□□□ -0.11
PDLIM1O00151 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.35□□□□□ -0.11
PDLIM1O00151 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.35□□□□□ -0.11
PDLIM1O00151 RNA5SP410-201ENST00000516285 106 ntBASIC14.35□□□□□ -0.11
PDLIM1O00151 RFPL4AP1-201ENST00000530883 850 ntBASIC14.35□□□□□ -0.11
PDLIM1O00151 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.35□□□□□ -0.11
PDLIM1O00151 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.35□□□□□ -0.11
PDLIM1O00151 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.35□□□□□ -0.11
PDLIM1O00151 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.35□□□□□ -0.11
PDLIM1O00151 AC018529.1-201ENST00000613063 361 ntBASIC14.35□□□□□ -0.11
PDLIM1O00151 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM1O00151 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM1O00151 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PDLIM1O00151 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
PDLIM1O00151 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms