Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC093214.1-201ENST00000511688 1107 ntBASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 RFPL4AP1-201ENST00000530883 850 ntBASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 SRD5A3P1-201ENST00000603021 949 ntBASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 AL390955.2-201ENST00000603032 514 ntBASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 AC008738.7-201ENST00000609744 511 ntBASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 PPT1-213ENST00000641319 2388 ntBASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 AC004840.1-201ENST00000636359 365 ntBASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC39Q9UFE4 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 AL158212.4-201ENST00000624062 1286 ntBASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC39Q9UFE4 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC39Q9UFE4 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms