Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 DRD5P1-201ENST00000456605 1438 ntBASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 HLA-K-203ENST00000430151 1046 ntBASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 GNAQP1-201ENST00000444815 1067 ntBASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 RNA5SP421-201ENST00000516864 134 ntBASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 AJ011932.1-201ENST00000621707 465 ntBASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM56Q9BRZ2 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 AC107373.2-201ENST00000607735 490 ntBASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 AL662799.1-202ENST00000614205 422 ntBASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 BTBD7P1-201ENST00000447253 1453 ntBASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 PTENP1-202ENST00000532280 3996 ntBASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM56Q9BRZ2 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms