Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
NUDCD3Q8IVD9 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 AC074044.1-201ENST00000609673 707 ntBASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 AL513210.1-201ENST00000629608 234 ntBASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 AGGF1P1-201ENST00000509500 2073 ntBASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUDCD3Q8IVD9 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 AC004461.1-201ENST00000412461 403 ntBASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 FDX1P1-201ENST00000449115 551 ntBASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 MIR6080-201ENST00000617359 66 ntBASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 C8orf49-201ENST00000525043 1968 ntBASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
NUDCD3Q8IVD9 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms