Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 AC097376.2-205ENST00000610159 5334 ntBASIC18.16■□□□□ 0.5
VPS53Q5VIR6 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS53Q5VIR6 GOLGA8DP-202ENST00000341390 2184 ntBASIC18.15■□□□□ 0.5
VPS53Q5VIR6 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 AC007191.1-201ENST00000623179 2995 ntBASIC18.15■□□□□ 0.5
VPS53Q5VIR6 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 LRRC59-203ENST00000576448 1531 ntBASIC18.15■□□□□ 0.5
VPS53Q5VIR6 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 KRT17P8-201ENST00000540749 863 ntBASIC18.15■□□□□ 0.5
VPS53Q5VIR6 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS53Q5VIR6 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS53Q5VIR6 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC18.14■□□□□ 0.5
VPS53Q5VIR6 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
VPS53Q5VIR6 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
VPS53Q5VIR6 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 SF1-209ENST00000433274 2317 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 AC140479.7-201ENST00000636301 2332 ntBASIC18.14■□□□□ 0.49
VPS53Q5VIR6 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 ANKRD19P-201ENST00000338192 862 ntBASIC18.14■□□□□ 0.49
VPS53Q5VIR6 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 AL355864.2-201ENST00000447420 863 ntBASIC18.14■□□□□ 0.49
VPS53Q5VIR6 AC022616.1-201ENST00000518688 554 ntBASIC18.14■□□□□ 0.49
VPS53Q5VIR6 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 HILS1-202ENST00000545329 423 ntBASIC18.14■□□□□ 0.49
VPS53Q5VIR6 SNX29P1-201ENST00000548357 1007 ntBASIC18.14■□□□□ 0.49
VPS53Q5VIR6 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS53Q5VIR6 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms