Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
RFC3P40938 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RFC3P40938 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFC3P40938 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFC3P40938 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFC3P40938 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFC3P40938 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RFC3P40938 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
RFC3P40938 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RFC3P40938 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.82□□□□□ -0.2
RFC3P40938 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RFC3P40938 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.82□□□□□ -0.2
RFC3P40938 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RFC3P40938 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.81□□□□□ -0.2
RFC3P40938 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RFC3P40938 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
RFC3P40938 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.81□□□□□ -0.2
RFC3P40938 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RFC3P40938 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 HLA-K-203ENST00000430151 1046 ntBASIC13.81□□□□□ -0.2
RFC3P40938 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.81□□□□□ -0.2
RFC3P40938 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 AC004466.1-201ENST00000599515 1080 ntBASIC13.81□□□□□ -0.2
RFC3P40938 OR10B1P-201ENST00000601666 907 ntBASIC13.81□□□□□ -0.2
RFC3P40938 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.81□□□□□ -0.2
RFC3P40938 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.81□□□□□ -0.2
RFC3P40938 AC023908.3-201ENST00000564211 3047 ntBASIC13.81□□□□□ -0.2
RFC3P40938 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.81□□□□□ -0.2
RFC3P40938 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFC3P40938 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
RFC3P40938 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.8□□□□□ -0.2
RFC3P40938 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.8□□□□□ -0.2
RFC3P40938 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.8□□□□□ -0.2
RFC3P40938 AC073347.1-201ENST00000421633 2643 ntBASIC13.8□□□□□ -0.2
RFC3P40938 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RFC3P40938 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RFC3P40938 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.8□□□□□ -0.2
RFC3P40938 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RFC3P40938 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.8□□□□□ -0.2
RFC3P40938 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RFC3P40938 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
RFC3P40938 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.8□□□□□ -0.2
RFC3P40938 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.8□□□□□ -0.2
RFC3P40938 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
RFC3P40938 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFC3P40938 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
RFC3P40938 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.8□□□□□ -0.2
RFC3P40938 BTBD6P1-201ENST00000412176 1267 ntBASIC13.8□□□□□ -0.2
RFC3P40938 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.8□□□□□ -0.2
RFC3P40938 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms